
genewise output
Score 858.57 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

TR1                3 GPEDLPKSYDYDLIIIGGGSGGLAAAK                       
                     G + +  SYDYDLI+IGGGSGGLAA+K                       
                     GHDHMQDSYDYDLIVIGGGSGGLAASK                       
PKMU01001697.1:48713 gcgcacgttgtgcagagggtggcggtaGTATGAG  Intron 1      
                     gaaataacaaaattttgggcggtccca<0-----[48794:49975]   
                     attcggtctcttctctagttatgttcg                       


TR1               30    EAAQYGKKVMVLDFVTPTPLGTRW                       
                        EAA+YGKKVMVLD+VTPTP GTRW                       
                        EAAKYGKKVMVLDYVTPTPQGTRW          G:G[ggt]     
PKMU01001697.1:49973 CAGgggatgaagagcgtgacaccgaatGGTAAATT  Intron 2     
                     -0>accaagaattttaatccccagcgg <1-----[50049:50167]  
                        gtcgtcgaggggcctttttgatag                       


TR1               54      LGGTCVNVGCIPKKLMHQAALLGQALQDSRNYGWKVEET      
                          LGGTCVNVGCIPKKLMHQAALLGQALQDSR +GW+ EE       
                          LGGTCVNVGCIPKKLMHQAALLGQALQDSRKFGWQFEEK      
PKMU01001697.1:50165 TAGGTcggatgaggtacaacaccggtcgcgtcgtcatgtctgga      
                     -1>  tggcgtatggtcaattaaccttgactaacgatggataaa      
                          taggtatgttataaggcgatgaaacaatacgtaggtgga      


TR1               94                           KHDWDRMIEAVQNHIGSLNWGYR 
                                               KH W+ M EAVQN+IGSLNWGYR 
                               V:V[gtc]        KHSWETMTEAVQNYIGSLNWGYR 
PKMU01001697.1:50287 GGTATGGA  Intron 3   CAGTCacatgaaagggcatagtcatgta 
                      <1-----[50288:51046]-1>  aaggactcactaaatgctaggag 
                                               accggagaattgtctctccgccg 


TR1              118 VALREKKVVYENAYGQFIGPHRIK                       AT 
                     V+LREKKV YENA+G+F+GPH IK                       AT 
                     VSLREKKVTYENAFGEFVGPHTIK                       AT 
PKMU01001697.1:51118 gttagaagatgagtggtggccaaaGTACCGA  Intron 4   TAGga 
                     tctgaaatcaaactgattgcacta<0-----[51190:51314]-0>cc 
                     gtgagggcatgttcaattggcatg                       aa 


TR1              144 NNKGKEKIYSAERFLIATGERPRYLGIPGDKEYCIS              
                     NNKGKEK+Y+AE+FLIATGERPRYLG+PGDKEYCI+              
                     NNKGKEKFYTAEKFLIATGERPRYLGVPGDKEYCIT              
PKMU01001697.1:51321 aaagagattaggatcagaggacctcggcggagttaa              
                     aaagaaataccaatttccgagcgatgtcgaaaagtc              
                     tcaaagatcaggatgtcttaggccgtctacgacctc              


TR1              180                           DDLFSLPYCPGKTLVVGASYVAL 
                                               DDLFSLPYCPGKTLVVGASYVAL 
                                S:S[agt]       DDLFSLPYCPGKTLVVGASYVAL 
PKMU01001697.1:51429 AGGTAAAAA  Intron 5   CAGTggcttccttcgaacggggttggc 
                       <2-----[51431:53589]-2> aattctcagcgactttgccatct 
                                               ttcctgtctaagcggtatcctct 


TR1              204 ECAGFLAGIGLDVTVMVRSILLRGFDQDMANKIGEHMEEHGIKFIRQFV 
                     ECAGFLAG+GLDVTVMVRSILLRGFDQ+MANKIGEHMEEHG+KFI++FV 
                     ECAGFLAGLGLDVTVMVRSILLRGFDQEMANKIGEHMEEHGVKFIKEFV 
PKMU01001697.1:53660 gtggtcggcgtggagagctactagtgcgagaaaggcaggcggataagtg 
                     agcgttcgtgtatctttgctttggtaaatcaatgaataaagtattaatt 
                     attattatttgtataggacctaaattgagacatgatgaatacgttagtg 


TR1              253 PIK                       VEQIEAGTPGRLRVVAQSTNSEE 
                     PIK                       VEQIE GTPG+L+V+AQST+  E 
                     PIK                       VEQIEEGTPGKLKVIAQSTDGRE 
PKMU01001697.1:53807 caaGTAAGCC  Intron 6   TAGggcagggacgacagagctaggag 
                     cta<0-----[53816:57745]-0>taataagccgatattcaccagga 
                     ata                       cagtaaattcagacacgcaccga 


TR1              279 IIEGEYNT                       VMLAIGRDACTRKIGLET 
                     IIEGEYNT                       V+LA+GRDACTR IGL+  
                     IIEGEYNT                       VLLAVGRDACTRTIGLDR 
PKMU01001697.1:57815 aagggtaaGTAAGTA  Intron 7   CAGgttgggaggtaaaagtga 
                     ttagaaac<0-----[57839:60499]-0>tttctggacgcgctgtag 
                     atagacct                       ggaaaaatacagattaca 


TR1              305 VGVKINE                          TGKIPVTDEEQTNVPY 
                     VGVKINE                          +GKIPV+DEEQTNVPY 
                     VGVKINE           K:R[aga]       SGKIPVSDEEQTNVPY 
PKMU01001697.1:60554 gggaaagAGGTAAGGA  Intron 8   TAGAtgaacgagggcaagct 
                     tgtataa  <2-----[60577:63528]-2> cgatctgaaaacatca 
                     taggcta                          aaattcttgaaatgtt 


TR1              329 IYAIGDILEDKVELTPVAIQAGRLLAQRLYAGSTVK              
                     IYAIGD+LE K+ELTPVAIQAGRLLAQRLYAG+T+K              
                     IYAIGDVLEGKLELTPVAIQAGRLLAQRLYAGATLK              
PKMU01001697.1:63578 atgagggtggacgcacggacggattgcactgggata              
                     tactgattagatatcctctacggttcagtacgccta              
                     ttctatgggggggcgagacaataggtagtttaacag              


TR1              365                        CDYENVPTTVFTPLEYGACGLSEEKA 
                                            CDY NVPTTVFTPLEYGACG SEE A 
                                            CDYVNVPTTVFTPLEYGACGFSEETA 
PKMU01001697.1:63686 GTAAGCA  Intron 9   CAGtgtgagcaagtaccgtggtgttggag 
                     <0-----[63686:65715]-0>gaatatcccttcctaagcggtcaacc 
                                            cctgttacaacaagatactacaagaa 


TR1              391 VEKFGEENIE                       VYHSYFWPLEWTIPSR 
                     +EKFGEENIE                       VYHSYFWPLEWT+PSR 
                     LEKFGEENIE                       VYHSYFWPLEWTVPSR 
PKMU01001697.1:65794 tgatgggaagGTAAACT  Intron 10  TAGgtcatttccgtagcta 
                     taatgaaata<0-----[65824:68331]-0>taagatgctagctccg 
                     gggtggattg                       tctttcgagggtcata 


TR1              417 DNNKCYAKIICNTKDN                       ERVVGFHVLG 
                     DNNKCYAKIICN +DN                       ERV+GFHVLG 
                     DNNKCYAKIICNIQDN                       ERVIGFHVLG 
PKMU01001697.1:68380 gaaattgaaataacgaGTAAGTG  Intron 11  TAGgcgagtcgcg 
                     aaaagacattgataaa<0-----[68428:70989]-0>agttgtattg 
                     cccactagaccttatt                       gatttctgtt 


TR1              443 PNAGEVTQGFAAALKCGLTKKQLDSTIGIHPVCAE               
                     PNAGEVTQGF+AA+KCGLTK QLD+TIGIHPVCAE               
                     PNAGEVTQGFSAAIKCGLTKAQLDNTIGIHPVCAE               
PKMU01001697.1:71020 caggggacgttggaatgcaagctgaaagaccgtgg               
                     cacgatcagtccctaggtcacataactgtactgca               
                     attaatcggtgaccatagaagggccaaattattag               


TR1              478                        VFTTLSVTKRSGASILQAGC       
                                            +FTTLSVTKRSG +ILQ+GC       
                                            IFTTLSVTKRSGGNILQSGC       
PKMU01001697.1:71125 GTGTGTA  Intron 12  TAGataactgaactggaacctgt       
                     <0-----[71125:77241]-0>ttcctctcagcggattacgg       
                                            accggagggtttatctgtcc       


//
Making a G in phase 1 intron
Making a V in phase 1 intron
Making a S in phase 2 intron
Making a R in phase 2 intron
>PKMU01001697.1:subseq(33060,127307).pep
GHDHMQDSYDYDLIVIGGGSGGLAASKEAAKYGKKVMVLDYVTPTPQGTRWGLGGTCVNV
GCIPKKLMHQAALLGQALQDSRKFGWQFEEKVKHSWETMTEAVQNYIGSLNWGYRVSLRE
KKVTYENAFGEFVGPHTIKATNNKGKEKFYTAEKFLIATGERPRYLGVPGDKEYCITSDD
LFSLPYCPGKTLVVGASYVALECAGFLAGLGLDVTVMVRSILLRGFDQEMANKIGEHMEE
HGVKFIKEFVPIKVEQIEEGTPGKLKVIAQSTDGREIIEGEYNTVLLAVGRDACTRTIGL
DRVGVKINERSGKIPVSDEEQTNVPYIYAIGDVLEGKLELTPVAIQAGRLLAQRLYAGAT
LKCDYVNVPTTVFTPLEYGACGFSEETALEKFGEENIEVYHSYFWPLEWTVPSRDNNKCY
AKIICNIQDNERVIGFHVLGPNAGEVTQGFSAAIKCGLTKAQLDNTIGIHPVCAEIFTTL
SVTKRSGGNILQSGC
//
>PKMU01001697.1:subseq(33060,127307).[48713:77301].sp
GGACATGATCACATGCAGGATTCCTATGACTATGATCTCATTGTCATTGGAGGGGGTTCT
GGAGGTCTGGCTGCTTCCAAGGAGGCTGCCAAGTATGGCAAGAAAGTGATGGTGCTGGAC
TACGTTACTCCTACTCCTCAGGGAACTAGATGGGGTCTTGGAGGGACGTGTGTAAATGTG
GGTTGTATACCTAAAAAACTGATGCACCAGGCAGCTTTGCTAGGACAAGCCTTACAAGAT
TCACGCAAGTTTGGATGGCAGTTTGAGGAGAAAGTCAAACACAGCTGGGAGACAATGACA
GAAGCTGTTCAGAATTACATTGGCTCTCTCAACTGGGGCTACAGGGTGTCTTTGAGAGAG
AAGAAGGTCACATATGAGAATGCTTTCGGAGAATTTGTTGGGCCGCACACAATTAAGGCA
ACAAATAACAAAGGAAAAGAGAAATTTTACACAGCGGAGAAATTTCTGATTGCCACTGGT
GAAAGGCCGCGCTACCTGGGTGTCCCTGGAGACAAGGAATACTGCATTACCAGTGATGAT
CTCTTCTCTCTGCCTTACTGTCCAGGAAAGACCCTGGTGGTTGGAGCTTCCTACGTTGCC
CTTGAATGTGCTGGATTTCTTGCAGGTCTTGGTTTGGATGTAACTGTAATGGTGCGATCC
ATCCTTTTAAGAGGATTTGATCAGGAAATGGCAAACAAAATTGGGGAACATATGGAAGAA
CATGGAGTCAAGTTTATTAAAGAGTTTGTGCCAATTAAAGTCGAACAGATTGAAGAAGGA
ACTCCTGGCAAACTGAAAGTCATAGCCCAGTCCACAGACGGCAGGGAAATAATTGAAGGG
GAATACAACACTGTGTTGTTAGCAGTAGGAAGAGATGCATGCACAAGGACAATTGGTTTA
GACAGAGTTGGAGTGAAGATCAATGAAAGATCAGGAAAAATTCCTGTCAGTGATGAGGAA
CAAACAAATGTGCCTTATATTTATGCCATTGGAGATGTGTTGGAGGGGAAGCTGGAGCTC
ACGCCAGTGGCAATCCAAGCAGGTAGATTGTTGGCTCAAAGGCTTTATGCTGGAGCAACC
TTAAAGTGCGACTATGTGAATGTTCCAACCACAGTATTCACACCACTGGAATATGGAGCC
TGTGGATTCTCAGAAGAGACAGCATTGGAGAAGTTTGGGGAGGAAAATATTGAGGTTTAC
CATAGTTATTTCTGGCCACTGGAGTGGACTGTCCCATCTAGAGACAACAACAAATGCTAT
GCAAAGATAATCTGCAATATTCAAGATAATGAGCGAGTTATTGGTTTCCATGTGCTTGGT
CCAAATGCTGGAGAAGTTACCCAGGGGTTTTCGGCAGCCATCAAATGTGGACTGACAAAA
GCGCAGTTGGACAACACAATAGGAATTCATCCAGTTTGTGCAGAGATATTCACCACGCTG
TCAGTGACGAAGCGTTCTGGTGGAAATATCCTTCAGTCTGGCTGC
//
PKMU01001697.1:subseq(33060,127307)	GeneWise	match	48713	77301	858.57	+	.	PKMU01001697.1:subseq(33060,127307)-genewise-prediction-1
PKMU01001697.1:subseq(33060,127307)	GeneWise	cds	48713	48793	0.00	+	0	PKMU01001697.1:subseq(33060,127307)-genewise-prediction-1
PKMU01001697.1:subseq(33060,127307)	GeneWise	intron	48794	49975	0.00	+	.	PKMU01001697.1:subseq(33060,127307)-genewise-prediction-1
PKMU01001697.1:subseq(33060,127307)	GeneWise	cds	49976	50048	0.00	+	0	PKMU01001697.1:subseq(33060,127307)-genewise-prediction-1
PKMU01001697.1:subseq(33060,127307)	GeneWise	intron	50049	50167	0.00	+	.	PKMU01001697.1:subseq(33060,127307)-genewise-prediction-1
PKMU01001697.1:subseq(33060,127307)	GeneWise	cds	50168	50287	0.00	+	2	PKMU01001697.1:subseq(33060,127307)-genewise-prediction-1
PKMU01001697.1:subseq(33060,127307)	GeneWise	intron	50288	51046	0.00	+	.	PKMU01001697.1:subseq(33060,127307)-genewise-prediction-1
PKMU01001697.1:subseq(33060,127307)	GeneWise	cds	51047	51189	0.00	+	2	PKMU01001697.1:subseq(33060,127307)-genewise-prediction-1
PKMU01001697.1:subseq(33060,127307)	GeneWise	intron	51190	51314	0.00	+	.	PKMU01001697.1:subseq(33060,127307)-genewise-prediction-1
PKMU01001697.1:subseq(33060,127307)	GeneWise	cds	51315	51430	0.00	+	0	PKMU01001697.1:subseq(33060,127307)-genewise-prediction-1
PKMU01001697.1:subseq(33060,127307)	GeneWise	intron	51431	53589	0.00	+	.	PKMU01001697.1:subseq(33060,127307)-genewise-prediction-1
PKMU01001697.1:subseq(33060,127307)	GeneWise	cds	53590	53815	0.00	+	1	PKMU01001697.1:subseq(33060,127307)-genewise-prediction-1
PKMU01001697.1:subseq(33060,127307)	GeneWise	intron	53816	57745	0.00	+	.	PKMU01001697.1:subseq(33060,127307)-genewise-prediction-1
PKMU01001697.1:subseq(33060,127307)	GeneWise	cds	57746	57838	0.00	+	0	PKMU01001697.1:subseq(33060,127307)-genewise-prediction-1
PKMU01001697.1:subseq(33060,127307)	GeneWise	intron	57839	60499	0.00	+	.	PKMU01001697.1:subseq(33060,127307)-genewise-prediction-1
PKMU01001697.1:subseq(33060,127307)	GeneWise	cds	60500	60576	0.00	+	0	PKMU01001697.1:subseq(33060,127307)-genewise-prediction-1
PKMU01001697.1:subseq(33060,127307)	GeneWise	intron	60577	63528	0.00	+	.	PKMU01001697.1:subseq(33060,127307)-genewise-prediction-1
PKMU01001697.1:subseq(33060,127307)	GeneWise	cds	63529	63685	0.00	+	1	PKMU01001697.1:subseq(33060,127307)-genewise-prediction-1
PKMU01001697.1:subseq(33060,127307)	GeneWise	intron	63686	65715	0.00	+	.	PKMU01001697.1:subseq(33060,127307)-genewise-prediction-1
PKMU01001697.1:subseq(33060,127307)	GeneWise	cds	65716	65823	0.00	+	0	PKMU01001697.1:subseq(33060,127307)-genewise-prediction-1
PKMU01001697.1:subseq(33060,127307)	GeneWise	intron	65824	68331	0.00	+	.	PKMU01001697.1:subseq(33060,127307)-genewise-prediction-1
PKMU01001697.1:subseq(33060,127307)	GeneWise	cds	68332	68427	0.00	+	0	PKMU01001697.1:subseq(33060,127307)-genewise-prediction-1
PKMU01001697.1:subseq(33060,127307)	GeneWise	intron	68428	70989	0.00	+	.	PKMU01001697.1:subseq(33060,127307)-genewise-prediction-1
PKMU01001697.1:subseq(33060,127307)	GeneWise	cds	70990	71124	0.00	+	0	PKMU01001697.1:subseq(33060,127307)-genewise-prediction-1
PKMU01001697.1:subseq(33060,127307)	GeneWise	intron	71125	77241	0.00	+	.	PKMU01001697.1:subseq(33060,127307)-genewise-prediction-1
PKMU01001697.1:subseq(33060,127307)	GeneWise	cds	77242	77301	0.00	+	0	PKMU01001697.1:subseq(33060,127307)-genewise-prediction-1
//
