
genewise output
Score 267.15 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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SelPb              1 MGPLLLALASCLGLAVAS--EGATNGSRLCHEAPAWRINGSSPMEGAAG 
                     MG L LA+A+ LGL VA+  E A N +RLC  AP W ING++PM GA G 
                     MGLLALAMATLLGLVVATLAEVAENKTRLCQPAPRWEINGTAPMTGALG 
PKMU01005800.1-53413 agccgcgagaccgcgggacgggggaaacctccgcctgaagagcaaggcg 
                     tgttctctccttgtttcctcatcaaacgtgacccggatagccctcgctg 
                     ggcgcacgccggggggcggaagcgcgcggcggtagggctggcggagggg 


SelPb             48 QVTVVALLKASXHFCLLQAR                          LGA 
                     +VTVVALLKASX FCL QA                           LG  
                     RVTVVALLKASXQFCLKQAN           S:S[agt]       LGG 
PKMU01005800.1-53266 cgagggccagatcttcacgaAGGTGAGCG  Intron 1   CAGTcgg 
                     gtcttcttacggatgtaaca  <2-----[53204:52874]-2> tgg 
                     ccgggggggccagctggacc                          cgc 


SelPb             72 LRERLGQQGVSDVRYVIVNEQAPLSRAMFGELQRHAPPGVPVLQQQPHE 
                     LRE+L Q G+ D+ Y+IVNE+ PLSRAMF EL+R AP  VPV QQ+  E 
                     LREKLSQDGLVDISYMIVNEKTPLSRAMFWELKRWAPEEVPVYQQEILE 
PKMU01005800.1-52863 tcgactcggcggaataagagaacctagattgcactgcgggcgtccgatg 
                     tgaatcaagttatgatttaaacctcgcttgataggccaatctaaaatta 
                     gtgggcgcggcccccgcgcggagccgcgcggggcgcgggcctcgggcgg 


SelPb            121 PDVWQLLGGDKDDFLVYD                          CGRLA 
                     PDVWQ+L GDKDDFL+YD                          CGRLA 
                     PDVWQILDGDKDDFLIYD           R:R[cgg]       CGRLA 
PKMU01005800.1-52716 cggtcacgggaggtcatgCGGTGAGTG  Intron 2   CAGGtgccg 
                     catgattagaaaatttaa  <2-----[52660:50196]-2> gggtc 
                     accggcgtgcgccccccc                          ccggt 


SelPb            145 FHIQLPYSFLHLPYVESAIRFTHRKDFCGNCSLYPNSTQE          
                     FHI LPYSFLH  YVESA+RFT+ KD+CGNCSLY NST E          
                     FHIPLPYSFLHFRYVESAVRFTYAKDICGNCSLYSNSTWE          
PKMU01005800.1-50179 tcactctatcctctggtggctatgagatgattcttaaatg          
                     tatctcagttatgatacctgtcacaatggagctacagcga          
                     cccaaccccgccctggacgtcctcgcctccccgcccccgg          


SelPb            185                        ANSTMEVPATLTP----LPKQEEKES 
                                            ANST E P +LT         EE+E  
                                            ANSTAEGPESLTQEGTGEGTGEEREQ 
PKMU01005800.1-50059 GTAAGGA  Intron 3   CAGgaaagggcgacacggagggagggagc 
                     <0-----[50059:48125]-0>cagccagcagtcaagcgagcgaagaa 
                                            accgagacgtccaaaaaaaaaaggag 


SelPb            207 ETPAHHQPNHLHPHHRAVGNGTAPEPSGDHRPAHAHHHHGAH        
                     E   H    H H HHRA  N   P+ S      H H HH  H        
                     ELSPHKSKAHHHHHHRASSNRN-PQAS-----SHTHSHHRDH        
PKMU01005800.1-48046 gctccaaagccccccagaaaca ccgt     tcacacccgc        
                     atccaagacaaaaaagcggaga cacc     cacagaagaa        
                     ggcccgcaccctcccaccccct cgct     cccccccacc        


//
Making a S in phase 2 intron
Making a R in phase 2 intron
>PKMU01005800.1:subseq(482669,103356).pep
MGLLALAMATLLGLVVATLAEVAENKTRLCQPAPRWEINGTAPMTGALGRVTVVALLKAS
XQFCLKQANSLGGLREKLSQDGLVDISYMIVNEKTPLSRAMFWELKRWAPEEVPVYQQEI
LEPDVWQILDGDKDDFLIYDRCGRLAFHIPLPYSFLHFRYVESAVRFTYAKDICGNCSLY
SNSTWEANSTAEGPESLTQEGTGEGTGEEREQELSPHKSKAHHHHHHRASSNRNPQASSH
THSHHRDH
//
>PKMU01005800.1:subseq(482669,103356).[53413:47937].sp
ATGGGGCTCCTGGCCCTAGCCATGGCCACCCTGCTGGGGCTGGTGGTGGCCACGCTGGCA
GAAGTGGCCGAGAACAAGACCCGGCTGTGCCAGCCGGCTCCACGGTGGGAGATCAATGGG
ACGGCCCCGATGACAGGGGCGCTGGGGCGCGTCACGGTGGTGGCGCTGCTGAAGGCCAGC
TGACAGTTCTGTCTGAAGCAAGCCAACAGTCTCGGGGGCTTGCGTGAGAAGCTGTCCCAG
GACGGGCTGGTCGACATCAGCTACATGATCGTGAACGAGAAGACACCGCTCTCCAGGGCC
ATGTTCTGGGAGCTGAAGCGCTGGGCCCCGGAGGAGGTCCCCGTTTACCAGCAGGAGATC
TTGGAGCCAGACGTCTGGCAGATCCTGGATGGGGACAAGGACGACTTCCTCATCTACGAC
CGGTGCGGCCGGCTGGCTTTCCACATCCCATTACCCTACAGCTTCCTGCACTTCCGCTAT
GTGGAGTCAGCCGTGCGTTTCACCTATGCCAAGGACATCTGTGGCAACTGCTCCCTGTAC
TCCAACAGCACCTGGGAGGCAAACAGCACGGCAGAGGGACCCGAGAGTCTCACCCAAGAA
GGAACAGGAGAAGGAACAGGAGAAGAGAGGGAACAGGAGCTGTCCCCCCACAAGAGCAAA
GCCCACCACCATCACCACCACAGAGCCAGCAGCAACCGCAATCCCCAGGCCTCTTCCCAC
ACCCACAGCCACCACCGAGACCAC
//
PKMU01005800.1:subseq(482669,103356)	GeneWise	match	53413	47939	275.14	-	.	PKMU01005800.1:subseq(482669,103356)-genewise-prediction-1
PKMU01005800.1:subseq(482669,103356)	GeneWise	cds	53413	53205	0.00	-	0	PKMU01005800.1:subseq(482669,103356)-genewise-prediction-1
PKMU01005800.1:subseq(482669,103356)	GeneWise	intron	53204	52874	0.00	-	.	PKMU01005800.1:subseq(482669,103356)-genewise-prediction-1
PKMU01005800.1:subseq(482669,103356)	GeneWise	cds	52873	52661	0.00	-	1	PKMU01005800.1:subseq(482669,103356)-genewise-prediction-1
PKMU01005800.1:subseq(482669,103356)	GeneWise	intron	52660	50196	0.00	-	.	PKMU01005800.1:subseq(482669,103356)-genewise-prediction-1
PKMU01005800.1:subseq(482669,103356)	GeneWise	cds	50195	50060	0.00	-	1	PKMU01005800.1:subseq(482669,103356)-genewise-prediction-1
PKMU01005800.1:subseq(482669,103356)	GeneWise	intron	50059	48125	0.00	-	.	PKMU01005800.1:subseq(482669,103356)-genewise-prediction-1
PKMU01005800.1:subseq(482669,103356)	GeneWise	cds	48124	47939	0.00	-	0	PKMU01005800.1:subseq(482669,103356)-genewise-prediction-1
//
