
genewise output
Score 149.83 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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SelW2             31 EPCGFEATYLELASAVKEQYPGIEIESRLGGT                  
                     EPCGFE+TYLELASAVKE+YP IEIESRLGG                   
                     EPCGFESTYLELASAVKEEYPDIEIESRLGGK                  
PKMU01002623.1:50000 gctgtgtatcgtgaggaggtcgagagtacgga                  
                     acggtaccatatcgctaaaacatatacgtgga                  
                     gctgtgcgcgagatagaagcataatacgcgga                  


SelW2             63                           AFEIEINGQLVFSKLENGGFPYE 
                                                FEIEINGQLVFSKLENGGFPYE 
                               G:G[ggt]        TFEIEINGQLVFSKLENGGFPYE 
PKMU01002623.1:50096 GGTAGGAT  Intron 1   AAGGTatgagaagccgttacgaggtctg 
                      <1-----[50097:51170]-1>  ctatatagatttcataaggtcaa 
                                               ctatactggtcccaaattctttg 


SelW2             87 KD                       LIEAIRRASNGETLEKITNSRPPC 
                     KD                       LIEAIRRA NGE LEKITNSRPPC 
                     KD                       LIEAIRRARNGEPLEKITNSRPPC 
PKMU01002623.1:51242 agGTAAGTA  Intron 2   TAGcaggaaagaaggccgaaaaaccct 
                     aa<0-----[51248:51840]-0>ttactggcgagactaatcaggccg 
                     gt                       ctaaaaacatgataaacccttcct 


SelW2            113 VIL                                               
                     VIL                                               
                     VIL                                               
PKMU01002623.1:51913 gac                                               
                     ttt                                               
                     ccg                                               


//
Making a G in phase 1 intron
>PKMU01002623.1:subseq(122868,101921).pep
EPCGFESTYLELASAVKEEYPDIEIESRLGGKGTFEIEINGQLVFSKLENGGFPYEKDLI
EAIRRARNGEPLEKITNSRPPCVIL
//
>PKMU01002623.1:subseq(122868,101921).[50000:51921].sp
GAGCCCTGTGGGTTTGAGTCCACGTACCTGGAATTGGCAAGTGCAGTGAAAGAAGAGTAC
CCAGATATAGAAATTGAATCCAGGCTCGGGGGGAAAGGTACCTTTGAAATTGAAATCAAT
GGGCAGCTTGTCTTCTCCAAACTAGAAAATGGTGGCTTTCCTTATGAGAAGGATCTCATT
GAAGCAATAAGAAGAGCCAGAAATGGGGAACCTCTAGAAAAAATCACCAACAGTCGTCCC
CCCTGTGTCATCCTG
//
PKMU01002623.1:subseq(122868,101921)	GeneWise	match	50000	51921	149.83	+	.	PKMU01002623.1:subseq(122868,101921)-genewise-prediction-1
PKMU01002623.1:subseq(122868,101921)	GeneWise	cds	50000	50096	0.00	+	0	PKMU01002623.1:subseq(122868,101921)-genewise-prediction-1
PKMU01002623.1:subseq(122868,101921)	GeneWise	intron	50097	51170	0.00	+	.	PKMU01002623.1:subseq(122868,101921)-genewise-prediction-1
PKMU01002623.1:subseq(122868,101921)	GeneWise	cds	51171	51247	0.00	+	2	PKMU01002623.1:subseq(122868,101921)-genewise-prediction-1
PKMU01002623.1:subseq(122868,101921)	GeneWise	intron	51248	51840	0.00	+	.	PKMU01002623.1:subseq(122868,101921)-genewise-prediction-1
PKMU01002623.1:subseq(122868,101921)	GeneWise	cds	51841	51921	0.00	+	0	PKMU01002623.1:subseq(122868,101921)-genewise-prediction-1
//
