
genewise output
Score 334.58 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SelU1              1 MSFLQDPSFFTMGMWSIGAGALGAAALALLLANTDVFLSKPQKAALEYL 
                     MS L D  +FTMGMWSIG GA+G A   +LLANTD+FLSKP+ A+LE+L 
                     MSSLPDLELFTMGMWSIGLGAVGVAVTGILLANTDLFLSKPEAASLEFL 
PKMU01001923.1-63632 attccgtgctaagattagcgggggggagaccgaagttctacgggttgtt 
                     tcctcatattctgtgctgtgctgtctcgtttcacatttcacaccctatt 
                     gtcgacggcccggggtcctgttctcgagttttcccgtccaggacgggta 


SelU1             50 EDIDLKTLEK                          PRTFKAKELWEKN 
                     E  +LK+L +                           RTFKA ELW+KN 
                     ETTELKSLGE          E:E[gaa]        ERTFKAGELWKKN 
PKMU01001923.1-63485 gaagcatcggGGTAAGAA  Intron 1   CAGAAgaatagggctaaa 
                     accatactga <1-----[63454:61517]-1>  agctacgatgaaa 
                     ggtgaatgaa                          aaacgatgagggt 


SelU1             74 GAVIMAVRRPGCFLCRE                       EAADLSSLK 
                     GAVIMAVRRPGCFLCRE                       EA++LSSLK 
                     GAVIMAVRRPGCFLCRE                       EASELSSLK 
PKMU01001923.1-61475 gggaaggcacgttttagGTATTGT  Intron 2   TAGggtgcttca 
                     gctttctggcggttgga<0-----[61424:53422]-0>accatccta 
                     tagcgtggatactgcag                       gttatctca 


SelU1            100 SMLDQLGVPLYAVVKEHIRTEVKDFQPYFKGEIFLDEK            
                      +LDQLGVPLYAVVKE I TEV+DFQ YFKGEIFLDEK            
                     PQLDQLGVPLYAVVKEKIGTEVEDFQRYFKGEIFLDEK            
PKMU01001923.1-53394 cccgccggcctgggagaagaggggtccttaggatcgga            
                     cataatgtctacttaaatgcataatagatagatttaaa            
                     tgtcatcccctttgaagtgcaggttgttcagaatgtag            


SelU1            138                        KKFYGPQRRKMMFMGFIRLGVWYNFF 
                                            KKFYGP +RKM+ MG+IRLGVW NF+ 
                                            KKFYGPHKRKMLSMGLIRLGVWQNFL 
PKMU01001923.1-53280 GTATGTT  Intron 3   CAGaattgccacaactagcactggtcatc 
                     <0-----[53280:52160]-0>aatagcaagattctgttgtgtgaatt 
                                            agctttcgaaggagttccaatggcct 


SelU1            164 RAWNGGFSGNLEGEGFILGGVFVVGSGKQ                     
                     RAW  G+SGNL+GEGFILGGV+V+G+GKQ                     
                     RAWKNGYSGNLKGEGFILGGVYVIGAGKQ                     
PKMU01001923.1-52081 cgtaagtagacagggtacgggtgagggacGTACTGC  Intron 4    
                     gcgaagaggatagagtttggtattgcgaa<0-----[51994:50093] 
                     ctggtacttcgaaagccgaattgtttggg                     


SelU1            193    GILLEHREKEFGDKVNLLSVLEAAKMIKPQ                 
                        G+LLEHRE+EFGDKV+L SVLEAA+ IKPQ                 
                        GVLLEHREREFGDKVSLQSVLEAAEKIKPQ                 
PKMU01001923.1-50095 TAGggctgccgagtggagacctgcggggaaacc                 
                     -0>gtttaagagatgaatgtacttaccaataca                 
                        ttcggtagaatacagctgtctattggaaaa                 


//
Making a E in phase 1 intron
>PKMU01001923.1:subseq(354236,113632).pep
MSSLPDLELFTMGMWSIGLGAVGVAVTGILLANTDLFLSKPEAASLEFLETTELKSLGEE
ERTFKAGELWKKNGAVIMAVRRPGCFLCREEASELSSLKPQLDQLGVPLYAVVKEKIGTE
VEDFQRYFKGEIFLDEKKKFYGPHKRKMLSMGLIRLGVWQNFLRAWKNGYSGNLKGEGFI
LGGVYVIGAGKQGVLLEHREREFGDKVSLQSVLEAAEKIKPQ
//
>PKMU01001923.1:subseq(354236,113632).[63632:50001].sp
ATGTCTTCCCTGCCAGACTTGGAGCTCTTCACCATGGGGATGTGGTCTATCGGCCTTGGG
GCTGTTGGCGTTGCCGTGACAGGGATTCTTCTTGCTAACACCGACTTGTTTCTCTCCAAA
CCGGAGGCAGCCTCGTTGGAGTTTTTAGAGACGACTGAGCTAAAATCTCTGGGAGAAGAA
GAAAGAACATTCAAGGCAGGTGAGCTATGGAAGAAGAATGGTGCAGTGATCATGGCTGTG
CGGAGACCTGGATGCTTTTTGTGCAGAGAGGAGGCTTCTGAACTTTCCTCTCTCAAACCT
CAGCTTGACCAACTTGGCGTCCCCCTCTATGCTGTTGTGAAAGAAAAGATTGGGACCGAA
GTGGAGGATTTTCAGCGTTATTTCAAAGGGGAAATATTTCTGGATGAAAAGAAAAAGTTC
TATGGTCCTCACAAGCGAAAAATGCTGTCAATGGGTCTTATCCGCTTAGGAGTTTGGCAG
AACTTCCTTCGCGCTTGGAAGAATGGATACAGTGGTAACCTGAAAGGAGAAGGGTTCATC
CTGGGAGGAGTTTATGTGATTGGTGCTGGGAAGCAGGGTGTTCTCTTGGAGCATCGAGAG
AGAGAATTTGGAGACAAAGTGAGCCTTCAGTCTGTCCTTGAAGCTGCTGAGAAGATAAAA
CCACAA
//
PKMU01001923.1:subseq(354236,113632)	GeneWise	match	63632	50003	334.58	-	.	PKMU01001923.1:subseq(354236,113632)-genewise-prediction-1
PKMU01001923.1:subseq(354236,113632)	GeneWise	cds	63632	63455	0.00	-	0	PKMU01001923.1:subseq(354236,113632)-genewise-prediction-1
PKMU01001923.1:subseq(354236,113632)	GeneWise	intron	63454	61517	0.00	-	.	PKMU01001923.1:subseq(354236,113632)-genewise-prediction-1
PKMU01001923.1:subseq(354236,113632)	GeneWise	cds	61516	61425	0.00	-	2	PKMU01001923.1:subseq(354236,113632)-genewise-prediction-1
PKMU01001923.1:subseq(354236,113632)	GeneWise	intron	61424	53422	0.00	-	.	PKMU01001923.1:subseq(354236,113632)-genewise-prediction-1
PKMU01001923.1:subseq(354236,113632)	GeneWise	cds	53421	53281	0.00	-	0	PKMU01001923.1:subseq(354236,113632)-genewise-prediction-1
PKMU01001923.1:subseq(354236,113632)	GeneWise	intron	53280	52160	0.00	-	.	PKMU01001923.1:subseq(354236,113632)-genewise-prediction-1
PKMU01001923.1:subseq(354236,113632)	GeneWise	cds	52159	51995	0.00	-	0	PKMU01001923.1:subseq(354236,113632)-genewise-prediction-1
PKMU01001923.1:subseq(354236,113632)	GeneWise	intron	51994	50093	0.00	-	.	PKMU01001923.1:subseq(354236,113632)-genewise-prediction-1
PKMU01001923.1:subseq(354236,113632)	GeneWise	cds	50092	50003	0.00	-	0	PKMU01001923.1:subseq(354236,113632)-genewise-prediction-1
//
