
genewise output
Score 322.89 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SelT               1 MRLLLLLLVAASAMVRSEASANLGGVPSKRLKMQYATGPLLKFQI     
                     MR+L LL + A+ + R  A+   G +P+K+L+M Y TGPLLKFQI     
                     MRMLALLFLLAAGLGR--AATEQGALPAKKLRMAYTTGPLLKFQI     
PKMU01006301.1:49952 acacgcctccgggcgc  ggagcggccgaaccagtaagcccatca     
                     tgttctttttccgtgg  cccaagctccaatgtcaccgcttatat     
                     gggggggccgggggcg  cgggggcggtgggcgccctgggcgcgc     


SelT              46                           VSXGYRRVFEEYMRVISQRYPDI 
                                                     RVFEEYMRVISQRYPDI 
                                C:X[tga]       ------RVFEEYMRVISQRYPDI 
PKMU01006301.1:50081 TGGTAAGTG  Intron 1   CAGA      cgtggtacgaacctcga 
                       <2-----[50083:56853]-2>       gttaaatgttgagacat 
                                                     ggtggcggttcggtacc 


SelT              70 RIEGENYLPQPIY                          HIASFLSVFK 
                     RIEGENYLPQPIY                          HIASFLSVFK 
                     RIEGENYLPQPIY           R:R[aga]       HIASFLSVFK 
PKMU01006301.1:56906 cagggatccccatAGGTATGAC  Intron 2   TAGAcagttctgta 
                     gtagaaatcacta  <2-----[56947:58167]-2> atccttctta 
                     ctagacctgatat                          caaccgacca 


SelT              94 LVLIGLIIVGKDPFAFFGMQAPSIWQWGQENK                  
                     LVLIGLIIVGKDPFAFFGMQAPSIWQWGQENK                  
                     LVLIGLIIVGKDPFAFFGMQAPSIWQWGQENK                  
PKMU01006301.1:58199 cgtagtaaggagctgttgacgcaatctgcgaa                  
                     ttttgttttgaactcttgtaccgtgaggaaaa                  
                     aaaacaattcgtcctctcgatatcgggcaatg                  


SelT             126                        VYACMMVFFLSNMIENQCMSTGAFEI 
                                            VYACMMVFFLSNMIENQCMSTGAFEI 
                                            VYACMMVFFLSNMIENQCMSTGAFEI 
PKMU01006301.1:58295 GTACATC  Intron 3   TAGgtgtaagttcaaaagactataggtga 
                     <0-----[58295:61008]-0>tacgttttttgattaaagtccgctat 
                                            ctttggtccgctgtgcgtgaatataa 


SelT             152 TLN                          VPVWSKLESGHLPSMQQLVQ 
                     TLN                          VPVWSKLESGHLPSMQQLVQ 
                     TLN          D:D[gat]        VPVWSKLESGHLPSMQQLVQ 
PKMU01006301.1:61087 ataGGTGAGTT  Intron 4   TAGATgcgttacgtgccctacccgc 
                     cta <1-----[61097:64060]-1>  tctgcatacgatcctaatta 
                     tgt                          taggtgggttcttcggggca 


SelT             176 ILDNEMKLNVHMDSIPHHRS                              
                     ILDNEMKLNVHM+S+ HHRS                              
                     ILDNEMKLNVHMESMHHHRS                              
PKMU01006301.1:64123 acgagaacagcagtacccct                              
                     ttaaatatatatactaaagc                              
                     ttttagactgcgaagcttaa                              


//
Making a X in phase 2 intron
Making a R in phase 2 intron
Making a D in phase 1 intron
>PKMU01006301.1:subseq(1215878,114182).pep
MRMLALLFLLAAGLGRAATEQGALPAKKLRMAYTTGPLLKFQIXRVFEEYMRVISQRYPD
IRIEGENYLPQPIYRHIASFLSVFKLVLIGLIIVGKDPFAFFGMQAPSIWQWGQENKVYA
CMMVFFLSNMIENQCMSTGAFEITLNDVPVWSKLESGHLPSMQQLVQILDNEMKLNVHME
SMHHHRS
//
>PKMU01006301.1:subseq(1215878,114182).[49952:64182].sp
ATGCGGATGCTGGCGCTGCTGTTCCTCCTGGCGGCGGGGCTGGGCCGGGCCGCGACGGAG
CAGGGGGCCCTGCCGGCTAAGAAGCTGCGCATGGCCTACACCACTGGGCCGCTGCTCAAG
TTCCAGATCTGACGGGTGTTTGAGGAGTACATGCGGGTTATTAGCCAGCGGTATCCAGAC
ATCCGCATTGAAGGGGAAAACTACCTTCCGCAACCTATATATAGACACATAGCATCCTTC
CTGTCAGTCTTCAAACTAGTATTAATAGGCTTAATAATTGTTGGCAAGGATCCCTTCGCT
TTCTTTGGCATGCAAGCTCCAAGTATCTGGCAGTGGGGCCAAGAAAATAAGGTCTATGCT
TGTATGATGGTTTTCTTCCTGAGCAATATGATTGAGAACCAGTGTATGTCAACAGGTGCA
TTTGAAATAACTTTGAATGATGTTCCAGTGTGGTCTAAGCTGGAGTCTGGTCACCTTCCT
TCCATGCAGCAGCTGGTCCAAATTCTTGATAATGAAATGAAACTCAATGTGCACATGGAA
TCAATGCACCATCATCGATCA
//
PKMU01006301.1:subseq(1215878,114182)	GeneWise	match	49952	64182	328.88	+	.	PKMU01006301.1:subseq(1215878,114182)-genewise-prediction-1
PKMU01006301.1:subseq(1215878,114182)	GeneWise	cds	49952	50082	0.00	+	0	PKMU01006301.1:subseq(1215878,114182)-genewise-prediction-1
PKMU01006301.1:subseq(1215878,114182)	GeneWise	intron	50083	56853	0.00	+	.	PKMU01006301.1:subseq(1215878,114182)-genewise-prediction-1
PKMU01006301.1:subseq(1215878,114182)	GeneWise	cds	56854	56946	0.00	+	1	PKMU01006301.1:subseq(1215878,114182)-genewise-prediction-1
PKMU01006301.1:subseq(1215878,114182)	GeneWise	intron	56947	58167	0.00	+	.	PKMU01006301.1:subseq(1215878,114182)-genewise-prediction-1
PKMU01006301.1:subseq(1215878,114182)	GeneWise	cds	58168	58294	0.00	+	1	PKMU01006301.1:subseq(1215878,114182)-genewise-prediction-1
PKMU01006301.1:subseq(1215878,114182)	GeneWise	intron	58295	61008	0.00	+	.	PKMU01006301.1:subseq(1215878,114182)-genewise-prediction-1
PKMU01006301.1:subseq(1215878,114182)	GeneWise	cds	61009	61096	0.00	+	0	PKMU01006301.1:subseq(1215878,114182)-genewise-prediction-1
PKMU01006301.1:subseq(1215878,114182)	GeneWise	intron	61097	64060	0.00	+	.	PKMU01006301.1:subseq(1215878,114182)-genewise-prediction-1
PKMU01006301.1:subseq(1215878,114182)	GeneWise	cds	64061	64182	0.00	+	2	PKMU01006301.1:subseq(1215878,114182)-genewise-prediction-1
//
