
genewise output
Score 146.43 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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SelR1              1 MSFCSFFGGEVFQNHFEP                          VYVCA 
                     MSFC+FFGGE F+ HFEP                          +YVC+ 
                     MSFCAFFGGEAFRGHFEP          G:G[ggc]        IYVCS 
PKMU01006623.1:50000 atttgttggggtcgctgcGGTAGGAG  Intron 1   TAGGCatgtt 
                     tctgcttggactggatac <1-----[50055:51725]-1>  tatgc 
                     gcccccccgggtgcccgc                          tcccc 


SelR1             25 KCGYELFSSRSKYAHSSPWPAFTETIHADSVAKRPEHNRSEALK      
                     KCGYELFSS +KY HSSPWPAFTE IHADSVAK  E  R  ALK      
                     KCGYELFSSTAKYQHSSPWPAFTEPIHADSVAKYEE--RPGALK      
PKMU01006623.1:51743 atgtgcttaagatccttctcgtagcacggaggatgg  ccggca      
                     aggaattcgccaaaacccgcctcactacagtcaaaa  gcgcta      
                     atttggcccaaacgcgtaggcctactttccgcgtag  ggccgg      


SelR1             69                        VSCGKCGNGLGHEFLNDGPKPGQSRF 
                                            VSCGKCGNGLGHEFLNDG K GQSRF 
                                            VSCGKCGNGLGHEFLNDGLKRGQSRF 
PKMU01006623.1:51869 GTGCTGA  Intron 2   CAGgttgatgagcgcgtcaggcaagctct 
                     <0-----[51869:52040]-0>tcggaggagtgaattaagtaggacgt 
                                            gcccatttggctgccccggggggtcc 


//
Making a G in phase 1 intron
>PKMU01006623.1:subseq(691771,102160).pep
MSFCAFFGGEAFRGHFEPGIYVCSKCGYELFSSTAKYQHSSPWPAFTEPIHADSVAKYEE
RPGALKVSCGKCGNGLGHEFLNDGLKRGQSRF
//
>PKMU01006623.1:subseq(691771,102160).[50000:52118].sp
ATGTCCTTCTGCGCCTTCTTCGGCGGGGAGGCGTTTCGGGGCCACTTCGAGCCCGGCATT
TACGTCTGCTCCAAATGTGGTTATGAGCTGTTCTCCAGCACAGCAAAATACCAGCACTCG
TCTCCATGGCCGGCCTTCACTGAACCCATTCATGCTGACAGCGTGGCCAAGTATGAAGAG
CGGCCGGGCGCCCTGAAGGTGTCCTGCGGCAAATGTGGTAATGGGCTGGGCCATGAGTTC
CTCAACGACGGGCTGAAGAGGGGGCAGTCTCGCTTC
//
PKMU01006623.1:subseq(691771,102160)	GeneWise	match	50000	52118	147.43	+	.	PKMU01006623.1:subseq(691771,102160)-genewise-prediction-1
PKMU01006623.1:subseq(691771,102160)	GeneWise	cds	50000	50054	0.00	+	0	PKMU01006623.1:subseq(691771,102160)-genewise-prediction-1
PKMU01006623.1:subseq(691771,102160)	GeneWise	intron	50055	51725	0.00	+	.	PKMU01006623.1:subseq(691771,102160)-genewise-prediction-1
PKMU01006623.1:subseq(691771,102160)	GeneWise	cds	51726	51868	0.00	+	2	PKMU01006623.1:subseq(691771,102160)-genewise-prediction-1
PKMU01006623.1:subseq(691771,102160)	GeneWise	intron	51869	52040	0.00	+	.	PKMU01006623.1:subseq(691771,102160)-genewise-prediction-1
PKMU01006623.1:subseq(691771,102160)	GeneWise	cds	52041	52118	0.00	+	0	PKMU01006623.1:subseq(691771,102160)-genewise-prediction-1
//
