
genewise output
Score 773.48 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SelN              61 QELALKTLGTDGLFLFSSLDTDGDMYISPEEFKPIAEKLTG         
                     QE+ALK+LG +GLFLFSSLDT+ D+YISPEEFKPIAEKLTG         
                     QEMALKSLGNEGLFLFSSLDTNNDLYISPEEFKPIAEKLTG         
PKMU01005290.1-62425 cgagtatcgaggctctttcgaaagctaacggtacaggatag         
                     aatctactgaagttttcctacaaatatgcaatactcaatcg         
                     gggcggtggtggttccctgctcttgctctggcggaagaaat         


SelN             102                           CSVTQT---GVQWCSHSSLQPQL 
                                               C V  T       C   SL  +L 
                                S:S[agc]       CEVPSTCPLDYYKCIIISLAVKL 
PKMU01005290.1-62302 AGGTATCCA  Intron 1   CAGCtggcaatctgttataaatcggat 
                       <2-----[62300:61620]-2> gatcgcgctaaaagtttctctat 
                                               tgtatccaacttatactttttaa 


SelN             123 PWLNXSSCLSLLRSTPAASCEEEELPPDPSEETLTIEARFQPLLPETMT 
                      +     CL +   TP    EEEE   DPS ETL+I A+FQPLL ETMT 
                     LF-----CLGV---TPVFEFEEEETL-DPSGETLSIVAKFQPLLMETMT 
PKMU01005290.1-61549 tt     ttgg   acgtgtggggac gcaggactaggatccccagaaa 
                     tt     gtgt   ccttataaaact acggactcttcatactttactc 
                     gc     tatt   ttccatagagaa tctggaaatttacgcgcgaagg 


SelN             172 KSKDGFLG                       VSRLALSGLRNWTAAASP 
                     KSKDGFLG                       +S +ALSGLRNWTA A+P 
                     KSKDGFLG                       ISHIALSGLRNWTAPAAP 
PKMU01005290.1-61429 aaaggtcgGTAAGTA  Intron 2   TAGatcagctgccatagcggc 
                     agaagttg<0-----[61405:60723]-0>tcatctcgtgagcccccc 
                     gcattcta                       tttttgtcagcgaaaact 


SelN             198 SAVFATRHFQPFLPPPGQ-ELGEPWWIIPSELSMFTGYLSNNRFYPPPP 
                      +++  R F+ FLPP  + ELG+PWWIIPSEL++FTGYLSNNRFYPP P 
                     MSMMFARQFKAFLPPKNKIELGDPWWIIPSELNIFTGYLSNNRFYPPVP 
PKMU01005290.1-60668 aaaatgactagtcccaaaagcggcttaacagtaatagtctaacttccgc 
                     tgtttcgatacttccaaatatgacggttcgatattcgatcaagtacctc 
                     gcggtcgacacttcagtgaacttcggacacaaccctcctctcgtctgcc 


SelN             246 KGKE                       VIIHRLLSMFHPRPFVKTRFAP 
                     KGKE                       ++IH+LLSMFHPRPFVKTRFAP 
                     KGKE                       IVIHKLLSMFHPRPFVKTRFAP 
PKMU01005290.1-60521 agagGTAAGAG  Intron 3   TAGagacactaatcccctgaactgc 
                     agaa<0-----[60509:60103]-0>tttaattgttacgcttacgtcc 
                     gcaa                       tgtcatgcgccttataatctct 


SelN             272 QGAVACLTAISDFYYTVMF                          IHAE 
                     QGAVAC+ AIS+FYY V F                          IHAE 
                     QGAVACIQAISEFYYIVAF           R:R[agg]       IHAE 
PKMU01005290.1-60036 cggggtacgaagtttaggtAGGTAAGAA  Intron 4   CAGGacgg 
                     agctcgtactgataattct  <2-----[59977:58683]-2> taca 
                     aatgcccgactgcctaagc                          ctca 


SelN             296 FQLSEPPDFPFWFSPAQFTGHIILSKDATHVRDFRLFVPNH         
                     FQL+EPPDFPFWFSP QFTGHI+LSKD++HVR+F+LFVPN          
                     FQLNEPPDFPFWFSPGQFTGHIVLSKDSSHVREFKLFVPNK         
PKMU01005290.1-58669 tccagccgtcttttcgctagcagctagttcgcgtactgcaa         
                     tataaccatctgtccgatcgatttcaaccatgatatttcaa         
                     cggtatacctcgtctcgcaccccgcgtccttagcgctcgcg         


SelN             337                           SLNVDMEWLYGASESSNMEVDIG 
                                               SLNVDMEWLYGASESSNMEVDIG 
                                R:R[agg]       SLNVDMEWLYGASESSNMEVDIG 
PKMU01005290.1-58546 AGGTATGGC  Intron 5   TAGGtcaggagtctggagaaaagggag 
                       <2-----[58544:56817]-2> ctatatagtagcgaggatatatg 
                                               tcctcgaggtggcacccgagtat 


SelN             361 YIPQ                       MELEATGPSVPSVILDEDGSMI 
                     Y+PQ                       MELE++GPS+PSVI DE+G+++ 
                     YLPQ                       MELESSGPSIPSVIRDENGNVM 
PKMU01005290.1-56746 ttccGTGTGTA  Intron 6   TAGagtgttgctactgacggagaga 
                     atca<0-----[56734:55655]-0>tataccgcctccttgaaagatt 
                     catg                       gaaataggcctcgttcatctgg 


SelN             387 DSHLPSGEPLQFVFEEIKWQQELSWEEAARRLEVAMYPFKK         
                     DS   +GEP+QFVFEEI WQ+E+SWEEAA++LEVAMYPFKK         
                     DSRDLAGEPIQFVFEEINWQREISWEEAAQKLEVAMYPFKK         
PKMU01005290.1-55588 gacgcgggcactgtggaatccgaatggggcatgggatctaa         
                     aggatcgactatttaatagagatggaaccaatatctactaa         
                     ccactgggatgtgtagccggaaatgagacgagatcgcgtgg         


SelN             428                        VSYLPFTEAFDRAKAENKLVHSILLW 
                                            VSYLPFT+AFDRAKAENKLVHSILLW 
                                            VSYLPFTQAFDRAKAENKLVHSILLW 
PKMU01005290.1-55465 GTAAGAA  Intron 7   CAGgttcctacgtgagaggaacgctacct 
                     <0-----[55465:54018]-0>tcatctcactagcacaaattactttg 
                                            tgctttggttcagatgcaggcccggg 


SelN             454 GALDDQSCX                          SGRTLRETVLESSP 
                     GALDDQSCX                          SGRTLRETVLESSP 
                     GALDDQSCX          G:G[ggt]        SGRTLRETVLESSP 
PKMU01005290.1-53939 ggtggctttGGTGAGCT  Intron 8   CAGGTtgcaccgagcgatc 
                     gctaaacgg <1-----[53911:52891]-1>  cggctgacttagcc 
                     ccgccgcca                          ggatcggtcgatgc 


SelN             478 ILTLLNESFISTWSLVKELEELQ                       NNQ 
                     IL LLNESFIS+WSLVKELEELQ                         + 
                     ILALLNESFISSWSLVKELEELQ                       TKR 
PKMU01005290.1-52846 acgccagataaattcgagtggccGTAAGCT  Intron 9   CAGaaa 
                     ttcttaagttgggcttaataata<0-----[52777:52059]-0>cag 
                     cttggcgcccttgagggaaaggg                       tgg 


SelN             504 ENSSHQKLAGLHLEKYSFPVEMMICLPNGTV                   
                     +N  + +LA LHLEKY+FPVEMMICLPNGTV                   
                     QNEFYSRLADLHLEKYNFPVEMMICLPNGTV                   
PKMU01005290.1-52049 cagttaacggcccgatatcggaaatccagag                   
                     aaataggtcatataaaatctatttgtcagct                   
                     gtacccagtcgtagatcctggggcctccaag                   


SelN             535                        VHHINANYFLDITSVKPEEIESNLFS 
                                            +HHINANYFLDITS+KPEE+ES++FS 
                                            IHHINANYFLDITSMKPEEVESSIFS 
PKMU01005290.1-51956 GTACGTT  Intron 10  CAGaccaagattcgaataacggggaaata 
                     <0-----[51956:50165]-0>taatacaattatcctacaataggttg 
                                            tctctcctcgttttggtaacgctctc 


SelN             561 FSSTFEDPSTATYMQFLKEGLRRGLPLLQ                     
                     FS+ FEDPSTATY+QFLKEGL+R    LQ                     
                     FSTNFEDPSTATYLQFLKEGLQRAKRFLQ                     
PKMU01005290.1-50086 ttaatggctagatcctcaggccagactcc                     
                     tccataacccccatattaagtagcagtta                     
                     cacttattctacccgcggaagaacagcgg                     


//
Making a S in phase 2 intron
Making a R in phase 2 intron
Making a R in phase 2 intron
Making a G in phase 1 intron
>PKMU01005290.1:subseq(4668252,80273).pep
QEMALKSLGNEGLFLFSSLDTNNDLYISPEEFKPIAEKLTGSCEVPSTCPLDYYKCIIIS
LAVKLLFCLGVTPVFEFEEEETLDPSGETLSIVAKFQPLLMETMTKSKDGFLGISHIALS
GLRNWTAPAAPMSMMFARQFKAFLPPKNKIELGDPWWIIPSELNIFTGYLSNNRFYPPVP
KGKEIVIHKLLSMFHPRPFVKTRFAPQGAVACIQAISEFYYIVAFRIHAEFQLNEPPDFP
FWFSPGQFTGHIVLSKDSSHVREFKLFVPNKRSLNVDMEWLYGASESSNMEVDIGYLPQM
ELESSGPSIPSVIRDENGNVMDSRDLAGEPIQFVFEEINWQREISWEEAAQKLEVAMYPF
KKVSYLPFTQAFDRAKAENKLVHSILLWGALDDQSCXGSGRTLRETVLESSPILALLNES
FISSWSLVKELEELQTKRQNEFYSRLADLHLEKYNFPVEMMICLPNGTVIHHINANYFLD
ITSMKPEEVESSIFSFSTNFEDPSTATYLQFLKEGLQRAKRFLQ
//
>PKMU01005290.1:subseq(4668252,80273).[62425:49998].sp
CAGGAGATGGCCTTGAAGTCTCTGGGGAATGAGGGGCTTTTTCTCTTCTCCTCTCTGGAC
ACTAACAATGATCTGTACATTAGCCCTGAGGAGTTCAAGCCGATAGCAGAGAAATTAACA
GGTAGCTGTGAGGTTCCAAGTACCTGCCCATTAGACTATTATAAATGTATAATCATTTCT
CTTGCTGTTAAATTATTGTTCTGTTTAGGTGTTACTCCTGTCTTCGAATTTGAAGAGGAA
GAGACACTAGATCCCAGTGGGGAGACACTATCAATTGTTGCTAAATTCCAGCCCCTGCTC
ATGGAAACAATGACGAAGAGCAAAGATGGTTTCCTTGGAATTTCTCATATTGCTCTGTCT
GGCCTACGGAACTGGACAGCACCAGCAGCCCCTATGAGCATGATGTTTGCCAGGCAATTC
AAAGCCTTTCTTCCCCCAAAGAATAAGATAGAACTCGGTGATCCCTGGTGGATAATCCCA
AGCGAATTAAACATCTTCACTGGCTACCTTTCCAATAACCGGTTTTACCCTCCGGTCCCC
AAGGGCAAAGAAATTGTGATTCACAAACTTTTGAGCATGTTCCACCCTCGTCCATTTGTA
AAAACTCGCTTTGCCCCTCAAGGAGCTGTGGCCTGCATCCAGGCAATCAGTGAGTTCTAC
TATATAGTAGCGTTCAGGATCCATGCCGAATTCCAGCTGAATGAACCTCCAGACTTCCCT
TTCTGGTTTTCCCCTGGCCAGTTCACAGGCCACATCGTCCTGTCCAAGGATTCCTCCCAT
GTTCGAGAGTTCAAGCTCTTTGTCCCGAACAAGAGGTCTCTCAACGTTGACATGGAATGG
CTGTATGGGGCGAGCGAAAGCAGCAACATGGAAGTGGATATAGGTTACTTACCTCAGATG
GAATTAGAATCTTCAGGGCCGTCCATCCCTTCCGTGATTCGTGACGAAAATGGCAATGTG
ATGGACAGCCGAGACCTTGCGGGGGAGCCAATTCAGTTTGTGTTTGAAGAGATCAACTGG
CAGCGAGAAATAAGTTGGGAAGAGGCAGCCCAGAAATTGGAAGTTGCCATGTACCCGTTT
AAGAAGGTTTCGTACCTTCCTTTTACGCAGGCTTTTGACAGAGCGAAAGCTGAGAACAAA
CTGGTGCACTCCATCCTGCTGTGGGGCGCCTTGGACGACCAGTCCTGCTGAGGTTCGGGG
CGAACTCTCCGGGAGACTGTCCTGGAAAGTTCGCCCATCCTTGCTCTGCTGAACGAGAGC
TTCATCAGTAGTTGGTCACTGGTGAAGGAATTAGAAGAGCTGCAGACTAAGAGGCAGAAT
GAATTCTACAGCAGACTGGCTGACCTGCATCTAGAGAAATATAACTTCCCTGTGGAGATG
ATGATCTGCCTTCCCAACGGAACAGTGATTCACCATATCAATGCCAACTATTTCCTGGAT
ATTACTTCTATGAAGCCTGAAGAAGTCGAGAGCAGTATCTTTAGCTTCTCAACCAATTTT
GAAGATCCTTCCACTGCAACCTACCTCCAGTTCCTGAAGGAAGGACTGCAAAGAGCCAAA
CGGTTCCTGCAG
//
PKMU01005290.1:subseq(4668252,80273)	GeneWise	match	62425	50000	781.47	-	.	PKMU01005290.1:subseq(4668252,80273)-genewise-prediction-1
PKMU01005290.1:subseq(4668252,80273)	GeneWise	cds	62425	62301	0.00	-	0	PKMU01005290.1:subseq(4668252,80273)-genewise-prediction-1
PKMU01005290.1:subseq(4668252,80273)	GeneWise	intron	62300	61620	0.00	-	.	PKMU01005290.1:subseq(4668252,80273)-genewise-prediction-1
PKMU01005290.1:subseq(4668252,80273)	GeneWise	cds	61619	61406	0.00	-	1	PKMU01005290.1:subseq(4668252,80273)-genewise-prediction-1
PKMU01005290.1:subseq(4668252,80273)	GeneWise	intron	61405	60723	0.00	-	.	PKMU01005290.1:subseq(4668252,80273)-genewise-prediction-1
PKMU01005290.1:subseq(4668252,80273)	GeneWise	cds	60722	60510	0.00	-	0	PKMU01005290.1:subseq(4668252,80273)-genewise-prediction-1
PKMU01005290.1:subseq(4668252,80273)	GeneWise	intron	60509	60103	0.00	-	.	PKMU01005290.1:subseq(4668252,80273)-genewise-prediction-1
PKMU01005290.1:subseq(4668252,80273)	GeneWise	cds	60102	59978	0.00	-	0	PKMU01005290.1:subseq(4668252,80273)-genewise-prediction-1
PKMU01005290.1:subseq(4668252,80273)	GeneWise	intron	59977	58683	0.00	-	.	PKMU01005290.1:subseq(4668252,80273)-genewise-prediction-1
PKMU01005290.1:subseq(4668252,80273)	GeneWise	cds	58682	58545	0.00	-	1	PKMU01005290.1:subseq(4668252,80273)-genewise-prediction-1
PKMU01005290.1:subseq(4668252,80273)	GeneWise	intron	58544	56817	0.00	-	.	PKMU01005290.1:subseq(4668252,80273)-genewise-prediction-1
PKMU01005290.1:subseq(4668252,80273)	GeneWise	cds	56816	56735	0.00	-	1	PKMU01005290.1:subseq(4668252,80273)-genewise-prediction-1
PKMU01005290.1:subseq(4668252,80273)	GeneWise	intron	56734	55655	0.00	-	.	PKMU01005290.1:subseq(4668252,80273)-genewise-prediction-1
PKMU01005290.1:subseq(4668252,80273)	GeneWise	cds	55654	55466	0.00	-	0	PKMU01005290.1:subseq(4668252,80273)-genewise-prediction-1
PKMU01005290.1:subseq(4668252,80273)	GeneWise	intron	55465	54018	0.00	-	.	PKMU01005290.1:subseq(4668252,80273)-genewise-prediction-1
PKMU01005290.1:subseq(4668252,80273)	GeneWise	cds	54017	53912	0.00	-	0	PKMU01005290.1:subseq(4668252,80273)-genewise-prediction-1
PKMU01005290.1:subseq(4668252,80273)	GeneWise	intron	53911	52891	0.00	-	.	PKMU01005290.1:subseq(4668252,80273)-genewise-prediction-1
PKMU01005290.1:subseq(4668252,80273)	GeneWise	cds	52890	52778	0.00	-	2	PKMU01005290.1:subseq(4668252,80273)-genewise-prediction-1
PKMU01005290.1:subseq(4668252,80273)	GeneWise	intron	52777	52059	0.00	-	.	PKMU01005290.1:subseq(4668252,80273)-genewise-prediction-1
PKMU01005290.1:subseq(4668252,80273)	GeneWise	cds	52058	51957	0.00	-	0	PKMU01005290.1:subseq(4668252,80273)-genewise-prediction-1
PKMU01005290.1:subseq(4668252,80273)	GeneWise	intron	51956	50165	0.00	-	.	PKMU01005290.1:subseq(4668252,80273)-genewise-prediction-1
PKMU01005290.1:subseq(4668252,80273)	GeneWise	cds	50164	50000	0.00	-	0	PKMU01005290.1:subseq(4668252,80273)-genewise-prediction-1
//
