
genewise output
Score 605.49 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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SPS2             112 FPALGIGMDSCVIPLRHGGLSLVQTTDFFYPLVEDPYMM           
                     F  +GIG+DSCVIPLRHGGLSLVQTTDFFYPLVEDPYMM           
                     FLLVGIGLDSCVIPLRHGGLSLVQTTDFFYPLVEDPYMM           
PKMU01001233.1-55687 tccggagcgttgaccacggctcgcaagtttccgggctaa           
                     ttttgtgtacgttctgaggtcttaccattacttaacatt           
                     cgcacaggcctctgcgtgtcctggcaccctagtgtccgg           


SPS2             151                        GRIACANVLSDLYAMGITECDNMLML 
                                            GRIACANVLSDLYAMGITECDNMLML 
                                            GRIACANVLSDLYAMGITECDNMLML 
PKMU01001233.1-55570 GTACGAG  Intron 1   CAGgcagtgagcagctgagaagtgaacac 
                     <0-----[55570:55134]-0>ggtcgcattgatactgtcagaatttt 
                                            cccctctggttctcgcccgcccgggg 


SPS2             177 LSVSQSMSEE                       EREKVTPLMVKGFRDA 
                     LSVSQ M++E                       EREK+ PL++KGFRDA 
                     LSVSQKMTDE                       EREKIMPLIIKGFRDA 
PKMU01001233.1-55055 cagacaaaggGTGAGGG  Intron 2   CAGgcgaaaccaaagtcgg 
                     tgtgaatcaa<0-----[55025:52337]-0>agaattctttagtgac 
                     gtccgaggtg                       gtagtgagccaccgtg 


SPS2             203 AEEGGTAVTGGQTVVNPWIIIGGVATVVCQPNEFI               
                     AE+GGT+VTGGQTV+NPWII+GGVATVVCQPNEFI               
                     AEDGGTSVTGGQTVLNPWIIVGGVATVVCQPNEFI               
PKMU01001233.1-52288 gggggatgaggcagtactaagggggaggtccagta               
                     caaggcctcggacttacgtttggtccttgacaatt               
                     ggtcggagacggtggtcgcccgctttggcgccacc               


SPS2             238                           PDSAVVGDVLVLTKPLGTQVAVN 
                                               PDSAV GDVLVLTKPLGTQVAVN 
                                M:M[atg]       PDSAVPGDVLVLTKPLGTQVAVN 
PKMU01001233.1-52183 ATGTGAGTG  Intron 3   CAGGcgaggcgggcgcaaccgacggga 
                       <2-----[52181:51626]-2> cagctcgattttcactgcatcta 
                                               actattatggggcgggcgggtcc 


SPS2             262 AHQWLDN                       PERWNKVKMVVSREEVELA 
                     AHQWLDN                       P+RWNK+K+VVS+E+VELA 
                     AHQWLDN                       PDRWNKIKLVVSKEDVELA 
PKMU01001233.1-51555 gcctcgaGTACGTA  Intron 4   CAGcgataaaacggtaggggcg 
                     caagtaa<0-----[51534:51280]-0>caggaatatttcaaatatc 
                     ttgggtt                       ccggtgtggagcagtgggc 


SPS2             288 YQEAMFNMATLNRT                          AGLMHTFNA 
                     YQEAMF+MA LNRT                          A LMHTFNA 
                     YQEAMFSMAMLNRT          A:A[gct]        ASLMHTFNA 
PKMU01001233.1-51222 tcggataagacaaaGGTAGGCA  Intron 5   CAGCTgatacatag 
                     aaacttgtcttagc <1-----[51179:50805]-1>  cgttactac 
                     cgacgctgcggcga                          ctggctctt 


SPS2             312 HAATDITGFGILGHSQNLAKQQRNEVSFVIHNLPIIAKMAAVSKASG-R 
                     HAATDITGFGILGH+QNLAKQQR+EVSFVIHNLPIIAKMAA+SKA G R 
                     HAATDITGFGILGHAQNLAKQQRSEVSFVIHNLPIIAKMAAISKACGNR 
PKMU01001233.1-50775 cggagaagtgatgcgcacgacccaggttgacatcaagaaggaaagtgac 
                     acccatcgtgttgacaatcaaaggatctttaatcttcatcctgacggag 
                     ctccccgctgcgctaacgcgggccggttccccgccccggtcccgccgtt 


SPS2             360 FGLLQGTSAETS                          GLLICLPREQA 
                     FGLLQGTS ETS                          GLLICLPREQA 
                     FGLLQGTSPETS          G:G[gga]        GLLICLPREQA 
PKMU01001233.1-50628 tgcccgatcgatGGTAGGAT  Intron 6   CAGGAgccattccgcg 
                     tgttagcccacc <1-----[50591:49997]-1>  gtttgtcgaac 
                     tgggggacagaa                          ggaccgcgagt 


SPS2             384 ARFCSEIKSSKYGEGHQAWIVGIVEKGNRTARIIDKPRVIEVLPRGATA 
                     ARFC+EIKS KYGEGHQAWI+GIVEKGN+TARIIDKPR+IEV+PRGATA 
                     ARFCAEIKSPKYGEGHQAWIIGIVEKGNQTARIIDKPRIIEVMPRGATA 
PKMU01001233.1-49961 gcttggaatcatgggccgtaagaggagacagcaagaccaaggaccggag 
                     cgtgcataccaagagaacgttgttaagaaccgttaacgttattcggccc 
                     cccttacgtcacgggcgcgccctggggcgtgcctcggcccaggcgccgc 


SPS2             433 AVLAPDSSNASSEPSS                                  
                     +   P  +N+S+ P +                                  
                     S---PQDNNSSTSPEA                                  
PKMU01001233.1-49814 t   ccgaataaacgg                                  
                     c   caaaacgcgcac                                  
                     c   cgcccaccctag                                  


//
Making a M in phase 2 intron
Making a A in phase 1 intron
Making a G in phase 1 intron
>PKMU01001233.1:subseq(62814,64624).pep
FLLVGIGLDSCVIPLRHGGLSLVQTTDFFYPLVEDPYMMGRIACANVLSDLYAMGITECD
NMLMLLSVSQKMTDEEREKIMPLIIKGFRDAAEDGGTSVTGGQTVLNPWIIVGGVATVVC
QPNEFIMPDSAVPGDVLVLTKPLGTQVAVNAHQWLDNPDRWNKIKLVVSKEDVELAYQEA
MFSMAMLNRTAASLMHTFNAHAATDITGFGILGHAQNLAKQQRSEVSFVIHNLPIIAKMA
AISKACGNRFGLLQGTSPETSGGLLICLPREQAARFCAEIKSPKYGEGHQAWIIGIVEKG
NQTARIIDKPRIIEVMPRGATASPQDNNSSTSPEA
//
>PKMU01001233.1:subseq(62814,64624).[55687:49774].sp
TTCCTGCTCGTAGGCATAGGGCTGGACTCCTGTGTCATTCCGCTCAGGCATGGGGGTCTC
TCCCTTGTGCAGACCACAGACTTCTTCTATCCACTGGTTGAGGATCCCTACATGATGGGC
CGCATCGCCTGTGCCAATGTGCTGAGTGATCTCTATGCCATGGGCATCACCGAGTGCGAC
AACATGCTGATGCTGCTGAGTGTCAGCCAGAAAATGACGGATGAGGAGCGTGAAAAGATT
ATGCCACTGATCATCAAAGGCTTCCGGGATGCGGCGGAGGATGGCGGGACGTCAGTGACA
GGCGGGCAGACTGTGTTGAATCCCTGGATCATCGTCGGGGGCGTTGCTACTGTGGTGTGC
CAGCCCAACGAATTCATCATGCCAGACAGTGCAGTTCCTGGAGATGTGCTGGTGCTGACC
AAGCCGCTGGGCACGCAGGTGGCTGTCAACGCTCATCAGTGGCTGGATAATCCCGACAGG
TGGAATAAGATTAAGCTGGTAGTGTCCAAAGAGGATGTGGAGCTGGCCTACCAGGAAGCC
ATGTTCAGTATGGCCATGCTGAACAGGACAGCTGCCAGTTTGATGCACACTTTCAATGCT
CACGCTGCCACCGACATCACGGGCTTTGGGATCTTGGGCCATGCACAAAACCTGGCCAAG
CAGCAGCGCAGCGAGGTGTCTTTTGTCATCCACAACTTGCCCATCATCGCCAAGATGGCT
GCCATCAGCAAGGCCTGCGGGAATCGTTTTGGGCTGCTGCAGGGGACATCCCCAGAGACA
TCAGGAGGGCTGCTAATCTGCTTGCCCCGGGAACAGGCTGCCCGCTTCTGTGCTGAAATC
AAGTCTCCCAAATACGGGGAGGGGCACCAGGCCTGGATCATCGGCATTGTGGAGAAGGGG
AACCAGACTGCGCGCATCATTGACAAGCCGCGCATCATCGAAGTGATGCCCCGGGGCGCC
ACGGCCTCCCCCCAGGACAACAACTCAAGCACCAGCCCTGAAGCG
//
PKMU01001233.1:subseq(62814,64624)	GeneWise	match	55687	49776	607.49	-	.	PKMU01001233.1:subseq(62814,64624)-genewise-prediction-1
PKMU01001233.1:subseq(62814,64624)	GeneWise	cds	55687	55571	0.00	-	0	PKMU01001233.1:subseq(62814,64624)-genewise-prediction-1
PKMU01001233.1:subseq(62814,64624)	GeneWise	intron	55570	55134	0.00	-	.	PKMU01001233.1:subseq(62814,64624)-genewise-prediction-1
PKMU01001233.1:subseq(62814,64624)	GeneWise	cds	55133	55026	0.00	-	0	PKMU01001233.1:subseq(62814,64624)-genewise-prediction-1
PKMU01001233.1:subseq(62814,64624)	GeneWise	intron	55025	52337	0.00	-	.	PKMU01001233.1:subseq(62814,64624)-genewise-prediction-1
PKMU01001233.1:subseq(62814,64624)	GeneWise	cds	52336	52182	0.00	-	0	PKMU01001233.1:subseq(62814,64624)-genewise-prediction-1
PKMU01001233.1:subseq(62814,64624)	GeneWise	intron	52181	51626	0.00	-	.	PKMU01001233.1:subseq(62814,64624)-genewise-prediction-1
PKMU01001233.1:subseq(62814,64624)	GeneWise	cds	51625	51535	0.00	-	1	PKMU01001233.1:subseq(62814,64624)-genewise-prediction-1
PKMU01001233.1:subseq(62814,64624)	GeneWise	intron	51534	51280	0.00	-	.	PKMU01001233.1:subseq(62814,64624)-genewise-prediction-1
PKMU01001233.1:subseq(62814,64624)	GeneWise	cds	51279	51180	0.00	-	0	PKMU01001233.1:subseq(62814,64624)-genewise-prediction-1
PKMU01001233.1:subseq(62814,64624)	GeneWise	intron	51179	50805	0.00	-	.	PKMU01001233.1:subseq(62814,64624)-genewise-prediction-1
PKMU01001233.1:subseq(62814,64624)	GeneWise	cds	50804	50592	0.00	-	2	PKMU01001233.1:subseq(62814,64624)-genewise-prediction-1
PKMU01001233.1:subseq(62814,64624)	GeneWise	intron	50591	49997	0.00	-	.	PKMU01001233.1:subseq(62814,64624)-genewise-prediction-1
PKMU01001233.1:subseq(62814,64624)	GeneWise	cds	49996	49776	0.00	-	2	PKMU01001233.1:subseq(62814,64624)-genewise-prediction-1
//
