
genewise output
Score 379.14 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

PSTK               1 LCLLCGLPAAGKTTTAQVLSQSVRKHKG--WQCVLLTYDDLIPMEAFIQ 
                     +C+LCGLPAAGK+T A+ L   +R+ KG  W CVLLTYDDLIP+EAF Q 
                     VCVLCGLPAAGKSTLARALPHILRRRKGPGWDCVLLTYDDLIPQEAFSQ 
PKMU01003645.1-56395 gtgttgccgggatacgcgcccaccacagcgtgtgccatggcaccggtac 
                     tgttggtcccgacctcgctcattgggagcggagtttcaaattcaactga 
                     gccgcgggggtacgggcagcctacgcgctcgctccgcctcttaggccca 


PSTK              48 ME---GPEEQQSL                       MGSWRLYRQELLL 
                      E   G   QQ L                       +  W+LYR ELL+ 
                     PETEAGLVAQQPL                       LSRWKLYRHELLV 
PKMU01003645.1-56248 cgagggcggccctGTCAGTA  Intron 1   TAGctctattccgctg 
                     cacacgttcaact<0-----[56209:54452]-0>tcggatagaattt 
                     agaaggcaaagag                       gtcgagcatagag 


PSTK              71 CLEHFLQALITGCH-YSPQNITETTWERFVCCLKEQGLISVRREDSASC 
                      LEHFLQALI G H Y+P N TE TW+ FV C KEQGLIS    D+ SC 
                     YLEHFLQALINGDHLYAPTNRTEATWKSFVSCFKEQGLISSEIHDAKSC 
PKMU01003645.1-54412 tcgcttcgcaaggcttgcaaaaggataatgtttagcgtattgacggatt 
                     ataattacttagaatacccagcaccgagttcgtaaagttccataacacg 
                     ctaccagttttattgttaacataaagatttctcaaaaactaaattcatt 


PSTK             119 QYLIDFTSPSPIYFVLDDNFYYRSMRYEVYQLARQ               
                      YLI+ T+  P+YFVLDDNFYY+SMRYEVYQLAR+               
                     HYLINTTTSRPLYFVLDDNFYYQSMRYEVYQLARK               
PKMU01003645.1-54265 cttaaaaatactttgtggatttcaaatggtccgca               
                     aattaccccgctatttaaataaagtgaataatcga               
                     tcaatactcaagtttgtcctttacgataacgatca               


PSTK             154                           TLGFCQLFLDCQVEVCLERNSQR 
                                               +LGFCQLFLDC +E CL+RN  R 
                               Y:Y[tat]        SLGFCQLFLDCPLESCLQRNCLR 
PKMU01003645.1-54160 TGTAATTT  Intron 2   TAGATttgttctttgtccgtttcaatca 
                      <1-----[54159:53203]-1>  ctgtgatttagctacgtagagtg 
                                               agcccgatactatgccaggttga 


PSTK             178 KQPLPEETIYAMAQKIECPNPEKYTWEHHSLILKSAGSALEDKYVIYRL 
                      QPLP+ETI  MA+K E PNPEK TWE +SLILKS     EDKYV+    
                     NQPLPDETICLMARKTEVPNPEKNTWEQNSLILKSVECTSEDKYVV--- 
PKMU01003645.1-53131 acctcggaatcagaaaggcacgaaatgcaacacaaggtatggatgg    
                     aactcaactgttcgacatcacaaacgaaagtttagtagccaaaatt    
                     tgaattgcatagaaaaaaattgacagaatcataatcactaatgttt    


PSTK             227 LLL                          LQMLDLLSAALENPVKPLEE 
                      +L                          LQ+++LL  ALENPVK +EE 
                     -IL           F:N[aat]       LQVINLLVTALENPVKQIEE 
PKMU01003645.1-52993  atAAGTTCTCC  Intron 3   TAGTtcgaattgagtgacgacagg 
                      tt  <2-----[52985:50689]-2> tattatttcctaactaataa 
                      aa                          gggttggtttgatagaatga 


PSTK             251 NTELK                       EIDRAICATSALHQTDQAIRR 
                     NTE K                       E DRAICA S LHQ DQA+RR 
                     NTEQK                       ETDRAICAASILHQADQAFRR 
PKMU01003645.1-50627 aagcaGTAGTAC  Intron 4   TAGgagagatggaacccggcgtac 
                     acaaa<0-----[50612:50105]-0>acagctgccgttaacaactgg 
                     tcaag                       aacacttatttccattgtcaa 


PSTK             277 IVSQTMKNAK                          NNVALCELRSLAE 
                     IVSQTMK+ +                           NV   E++ LAE 
                     IVSQTMKDVR          D:D[gat]        KNVLPNEMKILAE 
PKMU01003645.1-50041 agtcaaaggaGGTATGCA  Intron 5   TAGATaagccagaaacgg 
                     ttcactaatg <1-----[50010:49755]-1>  aattcaatattca 
                     tgtaaggtga                          atatatgggtgaa 


PSTK             301 ELNRLKLKFLEGLRHKSNEENQCCLQNNTFNINVTSAFSQEADDIVK   
                     ELN+LK +FLE LR   +++NQ CL ++ F  NV ++F Q  D++VK   
                     ELNKLKAEFLEDLRQGHHQKNQFCLPSSEFVTNVITSFQQATDNVVK   
PKMU01003645.1-49713 gcaacaggttggtccgcccaacttccaagtgaagaattccgagagga   
                     ataatacattaatgagaaaaaatgtcggattcattcctaaccaatta   
                     attgtaagcaataaagttaatgttgactattatcttacaaaactagg   


//
Making a Y in phase 1 intron
Making a N in phase 2 intron
Making a D in phase 1 intron
>PKMU01003645.1:subseq(1814304,106395).pep
VCVLCGLPAAGKSTLARALPHILRRRKGPGWDCVLLTYDDLIPQEAFSQPETEAGLVAQQ
PLLSRWKLYRHELLVYLEHFLQALINGDHLYAPTNRTEATWKSFVSCFKEQGLISSEIHD
AKSCHYLINTTTSRPLYFVLDDNFYYQSMRYEVYQLARKYSLGFCQLFLDCPLESCLQRN
CLRNQPLPDETICLMARKTEVPNPEKNTWEQNSLILKSVECTSEDKYVVILNLQVINLLV
TALENPVKQIEENTEQKETDRAICAASILHQADQAFRRIVSQTMKDVRDKNVLPNEMKIL
AEELNKLKAEFLEDLRQGHHQKNQFCLPSSEFVTNVITSFQQATDNVVK
//
>PKMU01003645.1:subseq(1814304,106395).[56395:49571].sp
GTGTGCGTCTTGTGCGGGCTGCCGGCGGCGGGTAAATCCACGCTGGCGCGCGCACTGCCC
CACATTCTACGCAGGCGCAAGGGCCCTGGCTGGGACTGTGTCCTCCTGACCTACGATGAC
CTTATTCCACAGGAGGCCTTCAGCCAACCAGAGACAGAAGCGGGGCTCGTAGCACAACAG
CCATTGCTGTCTCGCTGGAAATTGTACCGACATGAACTGTTAGTGTACCTTGAACACTTC
TTACAGGCTCTTATTAATGGAGATCATTTGTATGCTCCAACAAACAGAACTGAAGCAACA
TGGAAAAGTTTTGTTTCCTGTTTCAAAGAACAAGGATTAATCTCTTCAGAAATACATGAT
GCCAAATCTTGTCATTACTTAATAAATACAACCACTTCCAGACCATTGTATTTTGTTTTG
GATGACAACTTTTATTATCAAAGCATGAGATATGAAGTATACCAGCTAGCTCGCAAATAT
TCATTGGGCTTCTGCCAGTTATTTTTAGACTGTCCACTTGAGTCCTGCTTACAGAGGAAT
TGTCTGAGAAATCAGCCATTACCTGATGAGACCATATGTCTAATGGCAAGAAAAACAGAA
GTACCAAATCCTGAGAAAAACACATGGGAACAAAATAGCCTAATTCTAAAAAGTGTCGAA
TGCACTTCAGAAGATAAGTATGTTGTTATATTAAATTTGCAGGTGATTAATTTGTTGGTT
ACTGCTTTGGAAAATCCAGTGAAACAAATTGAGGAAAATACCGAACAAAAGGAAACAGAC
AGAGCCATTTGTGCAGCTAGTATTCTCCACCAAGCTGATCAGGCTTTCAGACGAATTGTG
TCTCAAACAATGAAGGATGTGAGAGATAAAAATGTACTTCCAAATGAGATGAAGATTCTG
GCAGAAGAACTTAATAAGCTTAAAGCAGAGTTCTTAGAAGATTTACGACAAGGGCATCAT
CAAAAAAATCAGTTTTGTCTGCCAAGCAGTGAATTTGTTACAAATGTCATTACTTCATTC
CAACAAGCAACAGACAATGTAGTGAAG
//
PKMU01003645.1:subseq(1814304,106395)	GeneWise	match	56395	49573	385.13	-	.	PKMU01003645.1:subseq(1814304,106395)-genewise-prediction-1
PKMU01003645.1:subseq(1814304,106395)	GeneWise	cds	56395	56210	0.00	-	0	PKMU01003645.1:subseq(1814304,106395)-genewise-prediction-1
PKMU01003645.1:subseq(1814304,106395)	GeneWise	intron	56209	54452	0.00	-	.	PKMU01003645.1:subseq(1814304,106395)-genewise-prediction-1
PKMU01003645.1:subseq(1814304,106395)	GeneWise	cds	54451	54160	0.00	-	0	PKMU01003645.1:subseq(1814304,106395)-genewise-prediction-1
PKMU01003645.1:subseq(1814304,106395)	GeneWise	intron	54159	53203	0.00	-	.	PKMU01003645.1:subseq(1814304,106395)-genewise-prediction-1
PKMU01003645.1:subseq(1814304,106395)	GeneWise	cds	53202	52986	0.00	-	2	PKMU01003645.1:subseq(1814304,106395)-genewise-prediction-1
PKMU01003645.1:subseq(1814304,106395)	GeneWise	intron	52985	50689	0.00	-	.	PKMU01003645.1:subseq(1814304,106395)-genewise-prediction-1
PKMU01003645.1:subseq(1814304,106395)	GeneWise	cds	50688	50613	0.00	-	1	PKMU01003645.1:subseq(1814304,106395)-genewise-prediction-1
PKMU01003645.1:subseq(1814304,106395)	GeneWise	intron	50612	50105	0.00	-	.	PKMU01003645.1:subseq(1814304,106395)-genewise-prediction-1
PKMU01003645.1:subseq(1814304,106395)	GeneWise	cds	50104	50011	0.00	-	0	PKMU01003645.1:subseq(1814304,106395)-genewise-prediction-1
PKMU01003645.1:subseq(1814304,106395)	GeneWise	intron	50010	49755	0.00	-	.	PKMU01003645.1:subseq(1814304,106395)-genewise-prediction-1
PKMU01003645.1:subseq(1814304,106395)	GeneWise	cds	49754	49573	0.00	-	2	PKMU01003645.1:subseq(1814304,106395)-genewise-prediction-1
//
