
genewise output
Score 343.02 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

MsrA              48 AKHHVNGNRTVEPFPEGTQMAVF                           
                     AKHHVNGNRTVEPFPEGTQM +F                           
                     AKHHVNGNRTVEPFPEGTQMVLF          G:G[ggt]         
PKMU01001278.-359629 gaccgagaaaggctcggacagttGGTAAGAT  Intron 1   CAGGT 
                     caaatagagctactcagcatttt <1-----[359559:29214-1>   
                     tactccacaagatcagaaggtat                           


MsrA              72 MGCFWGAERKFWVLKGVYSTQVGFAGGYTSNPTYKEVCS           
                     MGCFWGAERKFW  KGVYSTQVG+AGG T NPTY+EVCS           
                     MGCFWGAERKFWTQKGVYSTQVGYAGGCTPNPTYEEVCS           
PKMU01001278.-292137 agtttgggaattacaggttacggtgggtacacatgggtt           
                     tggtggcagatgcaagtaccatgacgggccaccaaatgc           
                     gatcgaagagtgagaaccctagttaagtcatcctaatta           


MsrA             111                           KTGHAEVVRVVYQPEHMSFEELL 
                                               KTGH E VRVVY+PE++ F++LL 
                               E:G[ggg]        KTGHTEAVRVVYRPENIRFQQLL 
PKMU01001278.-292020 GGTATGTC  Intron 2   TAGGGaagcagggcggtccgaaatcccc 
                      <1-----[292019:24746-1>  acgacactgttagcaatgtaatt 
                                               atctaatgatatgaaccatgagc 


MsrA             135 KVFWENHDPTQ                          MRQGNDHGTQYR 
                     KVFWENHDPTQ                          MRQGND GTQYR 
                     KVFWENHDPTQ          G:G[gga]        MRQGNDFGTQYR 
PKMU01001278.-247393 agttgacgcacGGTAGAGT  Intron 3   CAGGAaacgagtgactc 
                     attgaaaacca <1-----[247359:19461-1>  tgagaatgcaag 
                     gccggttcgaa                          ggattctcggtc 


MsrA             159 SAIYPTSAKQMEAALSSKENYQK                       VLS 
                     SAIY  S +QMEAAL SKE+YQK                       VL+ 
                     SAIYTFSQEQMEAALRSKEDYQK                       VLT 
PKMU01001278.-194574 tgatattcgcagggcctaggtcaGTAATAT  Intron 4   CAGgta 
                     cctactcaaatacctgcaaaaaa<0-----[194505:50162-0>ttc 
                     gcccgctgaggattgatagttag                       agg 


MsrA             185 EHGFGPITTDIREGQTFYYAEDYHQQYLSKNPNGYCGLGGTGVSCPVGI 
                     + GFG ITT+IRE   FYYAEDYHQQYLSKNPNGYCGLGGTGVSCPV + 
                     KSGFGTITTEIREAPEFYYAEDYHQQYLSKNPNGYCGLGGTGVSCPVSV 
PKMU01001278.1-50152 aagtgaaaagacggcgtttgggtccctcaaacagttgcggaggttcgag 
                     aggtgctccatgaccataacaaaaaaatgaacagaggtggcgtcgctgt 
                     gtttcacaaactgtggctttatctagtacgcctcttatgctaacttttt 


MsrA             234 KK                                                
                     KK                                                
                     KK                                                
PKMU01001278.1-50005 aa                                                
                     aa                                                
                     aa                                                


//
Making a G in phase 1 intron
Making a G in phase 1 intron
Making a G in phase 1 intron
>PKMU01001278.1:subseq(913309,409635).pep
AKHHVNGNRTVEPFPEGTQMVLFGMGCFWGAERKFWTQKGVYSTQVGYAGGCTPNPTYEE
VCSGKTGHTEAVRVVYRPENIRFQQLLKVFWENHDPTQGMRQGNDFGTQYRSAIYTFSQE
QMEAALRSKEDYQKVLTKSGFGTITTEIREAPEFYYAEDYHQQYLSKNPNGYCGLGGTGV
SCPVSVKK
//
>PKMU01001278.1:subseq(913309,409635).[359629:49998].sp
GCTAAACACCATGTCAACGGAAACAGAACAGTGGAACCTTTCCCAGAGGGAACACAGATG
GTTTTATTTGGTATGGGATGTTTCTGGGGAGCAGAGAGAAAGTTTTGGACACAGAAAGGA
GTCTACTCCACTCAAGTGGGTTATGCAGGAGGGTGTACCCCAAATCCCACCTATGAAGAA
GTTTGTTCAGGGAAAACTGGCCATACAGAAGCTGTGCGAGTTGTATATCGGCCAGAAAAC
ATCAGATTTCAGCAACTGCTCAAGGTCTTCTGGGAGAATCATGACCCGACACAAGGAATG
AGGCAAGGTAATGACTTTGGCACGCAGTATCGCTCGGCCATCTACACGTTCTCTCAGGAA
CAGATGGAAGCTGCTCTGCGATCTAAAGAGGATTATCAAAAGGTATTGACGAAGAGTGGT
TTTGGCACAATCACAACAGAAATCCGTGAGGCTCCGGAGTTCTATTATGCTGAAGATTAC
CATCAACAGTATCTAAGCAAGAACCCCAATGGCTATTGTGGACTTGGGGGCACTGGAGTA
TCCTGTCCTGTTAGTGTTAAAAAA
//
PKMU01001278.1:subseq(913309,409635)	GeneWise	match	359629	50000	343.02	-	.	PKMU01001278.1:subseq(913309,409635)-genewise-prediction-1
PKMU01001278.1:subseq(913309,409635)	GeneWise	cds	359629	359560	0.00	-	0	PKMU01001278.1:subseq(913309,409635)-genewise-prediction-1
PKMU01001278.1:subseq(913309,409635)	GeneWise	intron	359559	292140	0.00	-	.	PKMU01001278.1:subseq(913309,409635)-genewise-prediction-1
PKMU01001278.1:subseq(913309,409635)	GeneWise	cds	292139	292020	0.00	-	2	PKMU01001278.1:subseq(913309,409635)-genewise-prediction-1
PKMU01001278.1:subseq(913309,409635)	GeneWise	intron	292019	247465	0.00	-	.	PKMU01001278.1:subseq(913309,409635)-genewise-prediction-1
PKMU01001278.1:subseq(913309,409635)	GeneWise	cds	247464	247360	0.00	-	2	PKMU01001278.1:subseq(913309,409635)-genewise-prediction-1
PKMU01001278.1:subseq(913309,409635)	GeneWise	intron	247359	194613	0.00	-	.	PKMU01001278.1:subseq(913309,409635)-genewise-prediction-1
PKMU01001278.1:subseq(913309,409635)	GeneWise	cds	194612	194506	0.00	-	2	PKMU01001278.1:subseq(913309,409635)-genewise-prediction-1
PKMU01001278.1:subseq(913309,409635)	GeneWise	intron	194505	50162	0.00	-	.	PKMU01001278.1:subseq(913309,409635)-genewise-prediction-1
PKMU01001278.1:subseq(913309,409635)	GeneWise	cds	50161	50000	0.00	-	0	PKMU01001278.1:subseq(913309,409635)-genewise-prediction-1
//
