
genewise output
Score 383.66 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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GPx8               1 MEPLAAYPLKCSGPRAKVFAVLLSIVLCTVTLFLLQLKFLKPKINSFYA 
                     MEPL  YPLKCS P+A+VF V LS+VLCTV L LLQLKFLKPKI  FY+ 
                     MEPLTTYPLKCSVPKARVFVVFLSMVLCTVMLCLLQLKFLKPKIKDFYS 
PKMU01009122.1-55258 agccaatctattgcagagtggtctagttagactctccattacaaagttt 
                     tactccactagctcacgttttttctttgctttgttatattacataatac 
                     ggtcatttaatagcaagatttcgggtgtaagctgggcacaatacatttt 


GPx8              50 FEVKDAKGRTVSLEKYKGK                       VSLVVNV 
                     FEVKD++GRTVSLEKY+GK                        SLVVNV 
                     FEVKDSRGRTVSLEKYRGK                       ASLVVNV 
PKMU01009122.1-55111 tggagtagaagtcgatagaGTAAGTT  Intron 1   AAGgttggag 
                     tataacgggctctaaagga<0-----[55054:54400]-0>cctttat 
                     taggtcaggcttgggcaca                       gtgtacg 


GPx8              76 ASDCQLTDRNYLGLKELHKEFGPSHFSVLAFPCNQFGESEPRPSKEVES 
                     AS CQ TD+NY+ L+ELH+EFGPSHF+VLAFPCNQFGE EP  S+E+ES 
                     ASYCQHTDKNYIALQELHREFGPSHFTVLAFPCNQFGELEPSSSQEIES 
PKMU01009122.1-54378 gattccagaatagccgtcagtgctctagcgtctactggtgcatacgagt 
                     cgagaacaaaatctaatagatgccatcttctcgaatgatacgcgaatac 
                     ctccgcacatccaggaacagttaccctggccgctgtaaggtcacgaaat 


GPx8             125 FARKNYGVTFPIFHKIKILGSEGEPAFRFLV                   
                     FA++NYG TFPIFHKIKILGSE EPAF+FL+                   
                     FAKRNYGATFPIFHKIKILGSETEPAFKFLI                   
PKMU01009122.1-54231 tgaaatggatcatcaaaacgtgagcgtatca                   
                     tcagaagcctcttaatattgcacacctattt                   
                     tcgactaatcttccatgtgataaatatatga                   


GPx8             156                           SSKKEPRWNFWKYLVNPEGQVVK 
                                               SSKKEPRWNFWKYL+NPEG++VK 
                               D:D[gat]        SSKKEPRWNFWKYLINPEGKLVK 
PKMU01009122.1-54138 GGTAAATA  Intron 2   CAGATttaagcatattatcaacggacga 
                      <1-----[54137:50161]-1>  ccaaacggatgaattacagatta 
                                               tagagtggtcggttccaatatga 


GPx8             180 FWKPEEPIEVIRPDIAALVRQVIIKKKEDL                    
                     FW PEEPIE IRP++A+L+RQ+I+KKKEDL                    
                     FWTPEEPIENIRPEVASLIRQIIMKKKEDL                    
PKMU01009122.1-50089 ttacggcagaaacgggtcaacaaaaaaggc                    
                     tgccaactaatgcatccttgatttaaaaat                    
                     tgatagaaaccgaaaacgcggccgagaatc                    


//
Making a D in phase 1 intron
>PKMU01009122.1:subseq(724516,105258).pep
MEPLTTYPLKCSVPKARVFVVFLSMVLCTVMLCLLQLKFLKPKIKDFYSFEVKDSRGRTV
SLEKYRGKASLVVNVASYCQHTDKNYIALQELHREFGPSHFTVLAFPCNQFGELEPSSSQ
EIESFAKRNYGATFPIFHKIKILGSETEPAFKFLIDSSKKEPRWNFWKYLINPEGKLVKF
WTPEEPIENIRPEVASLIRQIIMKKKEDL
//
>PKMU01009122.1:subseq(724516,105258).[55258:49998].sp
ATGGAGCCTCTCACAACTTATCCTTTAAAATGTTCAGTGCCCAAAGCAAGGGTATTTGTT
GTTTTCCTGTCGATGGTTTTGTGTACAGTAATGCTCTGTCTGTTGCAGCTCAAATTCTTA
AAACCTAAAATCAAAGATTTTTATTCTTTTGAAGTGAAGGATTCCAGAGGGAGGACCGTT
TCTCTGGAGAAGTACAGAGGCAAAGCGTCTTTGGTTGTAAACGTGGCCAGTTACTGCCAG
CACACAGACAAAAATTACATCGCACTGCAGGAATTACACAGAGAGTTTGGTCCATCCCAC
TTCACTGTGCTGGCCTTCCCGTGCAATCAGTTTGGAGAATTGGAGCCTAGCTCAAGCCAG
GAAATAGAATCTTTTGCCAAGAGAAACTATGGAGCAACTTTCCCTATTTTCCACAAAATT
AAGATTCTGGGATCTGAAACAGAACCTGCATTTAAATTTCTGATAGATTCTTCAAAGAAA
GAGCCTAGGTGGAATTTCTGGAAGTATCTTATCAACCCAGAAGGTAAACTTGTGAAATTT
TGGACACCTGAAGAGCCAATAGAAAACATCAGGCCAGAAGTAGCATCCCTGATCAGGCAG
ATCATCATGAAAAAGAAAGAAGATCTC
//
PKMU01009122.1:subseq(724516,105258)	GeneWise	match	55258	50000	383.66	-	.	PKMU01009122.1:subseq(724516,105258)-genewise-prediction-1
PKMU01009122.1:subseq(724516,105258)	GeneWise	cds	55258	55055	0.00	-	0	PKMU01009122.1:subseq(724516,105258)-genewise-prediction-1
PKMU01009122.1:subseq(724516,105258)	GeneWise	intron	55054	54400	0.00	-	.	PKMU01009122.1:subseq(724516,105258)-genewise-prediction-1
PKMU01009122.1:subseq(724516,105258)	GeneWise	cds	54399	54138	0.00	-	0	PKMU01009122.1:subseq(724516,105258)-genewise-prediction-1
PKMU01009122.1:subseq(724516,105258)	GeneWise	intron	54137	50161	0.00	-	.	PKMU01009122.1:subseq(724516,105258)-genewise-prediction-1
PKMU01009122.1:subseq(724516,105258)	GeneWise	cds	50160	50000	0.00	-	2	PKMU01009122.1:subseq(724516,105258)-genewise-prediction-1
//
