
genewise output
Score 302.90 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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GPx7               8 AAWLLLWAAACAQQEQDFYDFKAVNIRGKLVSLEKYRGS           
                     AA L L  AA  Q+E DFY FK VNIRGKLVSLEKYRGS           
                     AALLFLAFAASQQKENDFYTFKVVNIRGKLVSLEKYRGS           
PKMU01008789.1-65674 ggccttgtggtccagagttataggaaagacgtcgatagt           
                     ccttttctcccaaaaaatactattatggattctaaaggc           
                     aggtcaacccgggagctttataaaccgcgactggacacg           


GPx7              47                        VSLVVNVASECGFTDQHYRALQQLQR 
                                            VSLVVNVASECGFTD HY+ALQQLQR 
                                            VSLVVNVASECGFTDSHYKALQQLQR 
PKMU01008789.1-65557 GTAAGTT  Intron 1   TAGgtcggaggagtgtagactagccctca 
                     <0-----[65557:53708]-0>tctttatcgaggtcagaaactaatag 
                                            attccttatgtataccccatcagaga 


GPx7              73 DLGPHHFNVLAFPCNQFGQQEPDSNKEIESFARRTYSVSFPMFSKIAVT 
                     DLG  +FNVLAFPCNQFGQQEPDSNKEIESFAR+TY  +FPMFSKIAVT 
                     DLGSQYFNVLAFPCNQFGQQEPDSNKEIESFARKTYGATFPMFSKIAVT 
PKMU01008789.1-53629 gcgtcttagcgtctactgccgcgaaagagatgcaatggatcataaagga 
                     atgcaatattctcgaatgaaacagaaatagtcgacagcctcttgatctc 
                     ctctatttggacattatggagactcaatgctcagtttccttgccataca 


GPx7             122 GTGAHPAFKYLA                          TSGKEPTWNFW 
                     G GA+ AFKYL                           ++G+EPTWNFW 
                     GAGANAAFKYLT          Q:E[gaa]        STGEEPTWNFW 
PKMU01008789.1-53482 ggggaggtattaGGTAAGTA  Intron 2   CAGAAtagggcatatt 
                     gcgcacctaatc <1-----[53445:50161]-1>  ccgaaccgatg 
                     ttttttccatat                          caaaaacgccg 


GPx7             146 KYLVAPDGKVVGAWDPTVSVEEVRPQITALVRKLILLKREDL        
                     KYLVAP+GK V AWD TV+++E++P IT L+RK++L ++ +L        
                     KYLVAPNGKAVKAWDSTVTIQEIKPYITELLRKILLKQKNEL        
PKMU01008789.1-50125 atcggcagaggagtgtagaacgaactaagctaaaccacaagc        
                     aattccagactacgacctctaatacatcattgatttaaaaat        
                     gctacttgaaagtgcatcttaaaatcctgtggaccgagatag        


//
Making a E in phase 1 intron
>PKMU01008789.1:subseq(476415,115638).pep
AALLFLAFAASQQKENDFYTFKVVNIRGKLVSLEKYRGSVSLVVNVASECGFTDSHYKAL
QQLQRDLGSQYFNVLAFPCNQFGQQEPDSNKEIESFARKTYGATFPMFSKIAVTGAGANA
AFKYLTESTGEEPTWNFWKYLVAPNGKAVKAWDSTVTIQEIKPYITELLRKILLKQKNEL
//
>PKMU01008789.1:subseq(476415,115638).[65674:49998].sp
GCAGCGCTGCTTTTCTTAGCATTCGCCGCCTCGCAGCAGAAAGAGAACGATTTTTATACA
TTTAAAGTAGTAAACATCAGGGGCAAGCTAGTCTCTCTGGAGAAATACAGAGGCTCGGTA
TCTCTTGTCGTCAATGTTGCAAGTGAGTGTGGATTTACAGACAGCCACTACAAAGCTCTC
CAACAGTTACAGAGAGACCTTGGCTCTCAATATTTTAATGTGCTGGCATTCCCATGTAAT
CAATTTGGGCAGCAAGAGCCAGACAGTAACAAAGAAATTGAGAGCTTTGCCCGAAAGACT
TATGGTGCCACCTTTCCTATGTTCAGCAAAATTGCAGTCACAGGTGCTGGTGCTAATGCT
GCCTTCAAATATTTAACTGAATCCACAGGAGAAGAACCAACCTGGAACTTCTGGAAGTAC
CTTGTAGCCCCTAATGGGAAAGCAGTAAAGGCTTGGGACTCAACTGTCACTATTCAAGAA
ATAAAACCTTACATCACTGAGCTTTTGAGGAAAATCCTCCTGAAACAGAAAAATGAACTG
//
PKMU01008789.1:subseq(476415,115638)	GeneWise	match	65674	50000	302.90	-	.	PKMU01008789.1:subseq(476415,115638)-genewise-prediction-1
PKMU01008789.1:subseq(476415,115638)	GeneWise	cds	65674	65558	0.00	-	0	PKMU01008789.1:subseq(476415,115638)-genewise-prediction-1
PKMU01008789.1:subseq(476415,115638)	GeneWise	intron	65557	53708	0.00	-	.	PKMU01008789.1:subseq(476415,115638)-genewise-prediction-1
PKMU01008789.1:subseq(476415,115638)	GeneWise	cds	53707	53446	0.00	-	0	PKMU01008789.1:subseq(476415,115638)-genewise-prediction-1
PKMU01008789.1:subseq(476415,115638)	GeneWise	intron	53445	50161	0.00	-	.	PKMU01008789.1:subseq(476415,115638)-genewise-prediction-1
PKMU01008789.1:subseq(476415,115638)	GeneWise	cds	50160	50000	0.00	-	2	PKMU01008789.1:subseq(476415,115638)-genewise-prediction-1
//
