
genewise output
Score 229.16 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

GPx4               8 RLLKPALLCGALAAPGLAGTM                       CASRD 
                     RL +  LLCGAL A GL+ +M                       CA  D 
                     RLGRRVLLCGALGARGLSRSM                       CAQAD 
PKMU01000001.1:49274 ccgacgcctggcggcgcacaaGTGAGTG  Intron 1   CAGtgcgg 
                     gtgggtttggctgcggtgggt<0-----[49337:50002]-0>gcaca 
                     cgcaggggcgggcagcgcgcg                       cgggt 


GPx4              34 DWRCARSMHEFSAKDIDGHMVNLDKY                        
                     DWR A+S++EF AKDIDGH V+L+KY                        
                     DWRAAKSIYEFHAKDIDGHDVSLEKY           R:K[aag]     
PKMU01000001.1:50018 gtcggatatgtcgagaggcggtcgatAAGTAAGTG  Intron 2     
                     aggccactaatacaatagaatctaaa  <2-----[50098:50650]  
                     cgatcacatacccacttccttcgagc                        


GPx4              60     GFVCIVTNVASQXGKTEVNYTQLVDLHARYAECGLRILAFPCNQF 
                         G+VCI+TNVAS+XGKT VNYTQLVD++ARYAE GLRIL FPCNQF 
                         GYVCIITNVASKXGKTNVNYTQLVDMYARYAERGLRILGFPCNQF 
PKMU01000001.1:50648 CAGGgtgtaaaaggtatgaaagataccggatgatggagtcacgtctact 
                     -2> gatgttcatccaggacataacattatacgacaggtgttgtcgaat 
                         gtccccctaacaaaatcacctgtctgccattggtaccgcccccgt 


GPx4             106 GKQ                       EPGSNEEIKEFAAGYNVKFDMFS 
                     G Q                       EPG   +IK+F A Y VKFDMFS 
                     GNQ                       EPGDESQIKQFVASYGVKFDMFS 
PKMU01000001.1:50787 gacGTGCGTG  Intron 3   TAGgcgggtcaactggatggatgata 
                     gaa<0-----[50796:51522]-0>acgaacataattcgagtatattg 
                     acg                       gtgtgtgcaattactgggtcgtc 


GPx4             132 KICVNGDDAHPLWKWMKIQPKGKGILG                       
                     KI VNGD+AHPLWKWMK QPKG+G LG                       
                     KIEVNGDNAHPLWKWMKDQPKGRGTLG           N:N[aat]    
PKMU01000001.1:51592 aaggaggagccctataagccagagacgAAGTGAGTG  Intron 4    
                     atatagaacactgagtaaacagggctg  <2-----[51675:52047] 
                     gagccgcccttcgaggatacaaaccga                       


GPx4             159     AIKWNFTK                       FLIDKNGCVVKRYG 
                         AIKWNFTK                       FLI+K G VVKRY  
                         AIKWNFTK                       FLINKEGQVVKRYS 
PKMU01000001.1:52045 TAGTgaatataaGTAGGAC  Intron 5   CAGtcaaaggcggaata 
                     -2> ctagatca<0-----[52073:52760]-0>tttaaagattagag 
                         aaagccag                       cctcggcgcggacc 


GPx4             182 PMEEPLV                                           
                     PM++P V                                           
                     PMDDPYV                                           
PKMU01000001.1:52803 caggctg                                           
                     ctaacat                                           
                     agttcta                                           


//
Making a K in phase 2 intron
Making a N in phase 2 intron
>PKMU01000001.1:subseq(5390762,102823).pep
RLGRRVLLCGALGARGLSRSMCAQADDWRAAKSIYEFHAKDIDGHDVSLEKYKGYVCIIT
NVASKXGKTNVNYTQLVDMYARYAERGLRILGFPCNQFGNQEPGDESQIKQFVASYGVKF
DMFSKIEVNGDNAHPLWKWMKDQPKGRGTLGNAIKWNFTKFLINKEGQVVKRYSPMDDPY
V
//
>PKMU01000001.1:subseq(5390762,102823).[49274:52823].sp
CGCCTGGGCAGACGGGTGCTGCTGTGCGGGGCGCTGGGCGCACGGGGCCTGAGCCGGAGC
ATGTGCGCGCAGGCGGATGACTGGCGAGCTGCCAAATCCATATATGAATTCCACGCCAAA
GACATTGATGGCCACGATGTTTCCCTGGAAAAGTACAAGGGGTATGTCTGCATCATCACC
AATGTAGCATCCAAATGAGGAAAAACTAACGTAAACTACACTCAGCTTGTCGATATGTAC
GCCAGATATGCTGAGAGGGGTTTACGCATCCTGGGCTTCCCCTGCAACCAGTTTGGAAAC
CAGGAGCCTGGGGATGAGTCTCAGATCAAACAATTTGTTGCAAGCTATGGGGTGAAGTTT
GACATGTTTAGCAAGATAGAGGTCAACGGGGACAACGCCCATCCTCTCTGGAAATGGATG
AAAGATCAACCCAAAGGAAGAGGCACCCTGGGAAATGCAATAAAATGGAACTTCACAAAG
TTCCTCATTAACAAGGAGGGCCAGGTCGTGAAGAGATACAGCCCAATGGATGATCCCTAT
GTA
//
PKMU01000001.1:subseq(5390762,102823)	GeneWise	match	49274	52823	229.16	+	.	PKMU01000001.1:subseq(5390762,102823)-genewise-prediction-1
PKMU01000001.1:subseq(5390762,102823)	GeneWise	cds	49274	49336	0.00	+	0	PKMU01000001.1:subseq(5390762,102823)-genewise-prediction-1
PKMU01000001.1:subseq(5390762,102823)	GeneWise	intron	49337	50002	0.00	+	.	PKMU01000001.1:subseq(5390762,102823)-genewise-prediction-1
PKMU01000001.1:subseq(5390762,102823)	GeneWise	cds	50003	50097	0.00	+	0	PKMU01000001.1:subseq(5390762,102823)-genewise-prediction-1
PKMU01000001.1:subseq(5390762,102823)	GeneWise	intron	50098	50650	0.00	+	.	PKMU01000001.1:subseq(5390762,102823)-genewise-prediction-1
PKMU01000001.1:subseq(5390762,102823)	GeneWise	cds	50651	50795	0.00	+	1	PKMU01000001.1:subseq(5390762,102823)-genewise-prediction-1
PKMU01000001.1:subseq(5390762,102823)	GeneWise	intron	50796	51522	0.00	+	.	PKMU01000001.1:subseq(5390762,102823)-genewise-prediction-1
PKMU01000001.1:subseq(5390762,102823)	GeneWise	cds	51523	51674	0.00	+	0	PKMU01000001.1:subseq(5390762,102823)-genewise-prediction-1
PKMU01000001.1:subseq(5390762,102823)	GeneWise	intron	51675	52047	0.00	+	.	PKMU01000001.1:subseq(5390762,102823)-genewise-prediction-1
PKMU01000001.1:subseq(5390762,102823)	GeneWise	cds	52048	52072	0.00	+	1	PKMU01000001.1:subseq(5390762,102823)-genewise-prediction-1
PKMU01000001.1:subseq(5390762,102823)	GeneWise	intron	52073	52760	0.00	+	.	PKMU01000001.1:subseq(5390762,102823)-genewise-prediction-1
PKMU01000001.1:subseq(5390762,102823)	GeneWise	cds	52761	52823	0.00	+	0	PKMU01000001.1:subseq(5390762,102823)-genewise-prediction-1
//
