
genewise output
Score 471.04 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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DI2                1 MGILSVDLLITLQILPVFFSNCLFLALYDSVILLKHVVLLLSRSKSTRG 
                     MG+LSVDLLI LQILP FFSNCLFLALYDSV+LLKH+VLLLSRSK+ RG 
                     MGLLSVDLLIALQILPGFFSNCLFLALYDSVVLLKHMVLLLSRSKAARG 
PKMU01005068.1-60976 agctaggtcagccatcgtttatctcgctgtggccacagcccactaggcg 
                     tgttgtatttctattcgttcagtttctaacttttaatttttggcaccgg 
                     gtgacatggcgtgcggttcctccttaccctgccggcgggcgtgtgggtc 


DI2               50 EWRRMLTSEGLRCVWKSFLLDAYKQ                       V 
                     EWRRMLTSEGLRCVW SFLLDAYKQ                       V 
                     EWRRMLTSEGLRCVWNSFLLDAYKQ                       V 
PKMU01005068.1-60829 gtcaacatggcctgtaatccggtacGTGGGTA  Intron 1   CAGg 
                     agggttccagtggtgagtttacaaa<0-----[60754:50570]-0>t 
                     ggaaggcggaacccgtcccatccgg                       g 


DI2               76 KLGEDAPNSSVVHVSSTEGGDNSGNGTQEKIA--EGATCHLLDFASPER 
                     KLG +APNS+V+H+++   G +S +  ++ +    G  CHLLDFA+ ER 
                     KLGGEAPNSNVIHIAN---GSSSSSSRRKSVGGKYGTKCHLLDFANSER 
PKMU01005068.1-50566 acggggcatagacaga   gaaaaaaaaaagggatgaatcccgtgatgc 
                     atggaccacattatca   gggggggggagtggaagcagattatcacag 
                     agaaacacctgccatt   ccccttcaaatttgatacgcctgctctagc 


DI2              123 PLVVNFGSATXPPFTSQLPAFRKLVEEFSSVADFLLVYIDEAHPSDGWA 
                     PLVVNFGSATXPPFT+QL AF KLVEEFS VADFLLVYIDEAHPSDGWA 
                     PLVVNFGSATXPPFTNQLSAFGKLVEEFSGVADFLLVYIDEAHPSDGWA 
PKMU01005068.1-50428 ccggatgtgatcctaacctgtgacgggttggggtctgtagggcctggtg 
                     ctttatgcccgcctcaatcctgattaatcgtcattttataacaccaggc 
                     gggtcttaccacacgcgggcccgggggcatgctcggccctgtcagtcgt 


DI2              172 IPGDSSLSFEVKKHQNQEDRCAAAQQLLERFSLPPQCRVVADRMDNNAN 
                      PG S  SFEV+KH+NQEDRCAAA QLLERFSLPPQC+VV D MDNNAN 
                     APGISPSSFEVRKHRNQEDRCAAAHQLLERFSLPPQCQVVTDCMDNNAN 
PKMU01005068.1-50281 gcgatctttggaacaacggctgggccctgctttccctcggagtagaaga 
                     ccgtcccctatgaagaaaaggcccaattagtctccagattcagtaaaca 
                     ctgctccatggggcgcgacattctcgcgggtcgacgcagatccgcttat 


DI2              221 IAYGVAFERVCIVQRQKIAYLGGKGPFSYNLQEVRHWLEKNFSKR     
                     +AYGV+FERVCIVQRQKIAYLGGKGPF YNLQEVR WLE+NFSKR     
                     VAYGVSFERVCIVQRQKIAYLGGKGPFFYNLQEVRLWLEQNFSKR     
PKMU01005068.1-50134 ggtggttgcgtagcacaagtcggagctttaccggcctcgcataaa     
                     tcagtctagtgttagaatcatggagcttaataatgtgtaaatgag     
                     gctgcccgagccggagatccggcgcctccccgacgtgggacccga     


//
>PKMU01005068.1:subseq(5456389,110976).pep
MGLLSVDLLIALQILPGFFSNCLFLALYDSVVLLKHMVLLLSRSKAARGEWRRMLTSEGL
RCVWNSFLLDAYKQVKLGGEAPNSNVIHIANGSSSSSSRRKSVGGKYGTKCHLLDFANSE
RPLVVNFGSATXPPFTNQLSAFGKLVEEFSGVADFLLVYIDEAHPSDGWAAPGISPSSFE
VRKHRNQEDRCAAAHQLLERFSLPPQCQVVTDCMDNNANVAYGVSFERVCIVQRQKIAYL
GGKGPFFYNLQEVRLWLEQNFSKR
//
>PKMU01005068.1:subseq(5456389,110976).[60976:49998].sp
ATGGGTCTGTTAAGCGTAGATTTGCTGATCGCGCTTCAGATCTTGCCGGGTTTTTTCTCC
AATTGCCTCTTTCTTGCACTCTACGACTCTGTGGTCCTCCTGAAGCACATGGTGCTGCTC
CTGAGTCGGTCTAAGGCGGCGCGTGGCGAGTGGCGAAGAATGCTGACCTCGGAGGGACTA
CGCTGCGTCTGGAATAGCTTCCTCCTAGATGCCTACAAGCAGGTGAAACTGGGAGGAGAA
GCCCCAAACTCCAATGTGATCCACATAGCTAATGGCAGCAGCAGCAGTAGTAGCAGAAGA
AAAAGTGTTGGTGGGAAATATGGAACCAAGTGCCACCTTCTGGACTTTGCCAATTCAGAG
CGCCCGCTGGTGGTTAACTTTGGTTCAGCCACCTGACCCCCATTCACGAACCAGCTGTCG
GCCTTCGGCAAGCTGGTGGAGGAGTTCTCAGGTGTGGCCGATTTCCTGTTGGTCTACATC
GATGAGGCTCACCCATCGGATGGCTGGGCTGCCCCTGGGATCTCTCCCTCCTCATTTGAG
GTGAGGAAGCACAGGAACCAGGAAGACCGATGTGCTGCCGCTCACCAGCTCTTGGAGCGG
TTTTCCTTGCCACCCCAGTGCCAAGTGGTAACTGACTGCATGGACAATAATGCAAATGTG
GCCTATGGGGTCTCCTTCGAGCGAGTGTGCATCGTGCAGAGACAGAAAATTGCCTACCTG
GGGGGCAAGGGCCCCTTTTTCTACAACCTCCAGGAAGTCCGGCTTTGGCTGGAGCAAAAC
TTCAGCAAGAGA
//
PKMU01005068.1:subseq(5456389,110976)	GeneWise	match	60976	50000	474.03	-	.	PKMU01005068.1:subseq(5456389,110976)-genewise-prediction-1
PKMU01005068.1:subseq(5456389,110976)	GeneWise	cds	60976	60755	0.00	-	0	PKMU01005068.1:subseq(5456389,110976)-genewise-prediction-1
PKMU01005068.1:subseq(5456389,110976)	GeneWise	intron	60754	50570	0.00	-	.	PKMU01005068.1:subseq(5456389,110976)-genewise-prediction-1
PKMU01005068.1:subseq(5456389,110976)	GeneWise	cds	50569	50000	0.00	-	0	PKMU01005068.1:subseq(5456389,110976)-genewise-prediction-1
//
