
genewise output
Score 307.69 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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DI1               10 LKRLWVLLEVAVHVVVGKVLLILFPDRVKRNILAMGEKTGMTRNPHFSH 
                     +++  +LL V++HV VGK+L+ILFP+ +KR IL +G+K+ +  NP FS+ 
                     IQKTLILLYVSLHVAVGKILMILFPEMMKRYILKQGQKSSIATNPKFSY 
PKMU01008277.1-57481 acaatacttgtccggggaacaattcgaaaatacacgcaaaagaacatat 
                     taacttttatctatctgattttttcattagattaagaaggtccacatga 
                     aagcgttgtatgtttttatggagcaaggaattaaggagccacgtagcct 


DI1               59 DNWIPTFFSTQYFWFVLKVRWQRLEDTTELGGLAPNCPVVRLSGQRCNI 
                     +NW PTFFS +Y+ FVLKV+W+RLED   LG  APN PV    G+  +I 
                     ENWGPTFFSFKYLLFVLKVKWKRLEDAAFLGHNAPNTPVADFRGEVHHI 
PKMU01008277.1-57334 gatgcattatattctgtagataacggggttgcagcaacgggtagggcca 
                     aaggccttgtaatttttatagagtaaccttgaaccacctcatggataat 
                     gcgtgtccccatacttgagggaggatagtaatttcccagaccgtagtcc 


DI1              108 WEFMQ                          NRPLVLNFGSCTXPSFMF 
                      +FMQ                          NRPLVLNFGSCTXPSF+F 
                     LDFMQ          G:D[gac]        NRPLVLNFGSCTXPSFLF 
PKMU01008277.1-57187 tgtacGGTCAGTG  Intron 1   CAGACaactgcatgatatcttct 
                     tatta <1-----[57171:55440]-1>  agctttatgggcgccttt 
                     gccga                          cgtacgttacccatattc 


DI1              132 KFDQFKRLIEDFSSIADFLVIYIEEAHAS                     
                     KF +F RL+EDF+SIADFL+IYIEEAHA+                     
                     KFSEFNRLVEDFNSIADFLIIYIEEAHAT                     
PKMU01008277.1-55383 atagtaacgggtataggtcaatagggcga                     
                     atgatagttaatactcattttataacacc                     
                     actgccgttatttcaatctactcaattaa                     


DI1              161                           GWAFKNNMDIRNHQNLQDRLQAA 
                                               GWAFKNN+ I+NH+NLQDR  AA 
                               D:D[gat]        GWAFKNNIIIKNHRNLQDRKTAA 
PKMU01008277.1-55296 GGTACAGT  Intron 2   AAGATgtgtaaaaaaaaccaccgcaagg 
                      <1-----[55295:50000]-1>  ggctaaatttaaagataagaccc 
                                               agttacctttatcactataagta 


DI1              185 HLLLARSPQCPVVVDTMQNQSSQLYAALPERLYIIQEGRILYK       
                       LL  +P CPVV+DTM+N SS  YAALPERLY++Q G+++YK       
                     QFLLKENPLCPVVLDTMENLSSSKYAALPERLYLVQGGKVVYK       
PKMU01008277.1-49928 ctctagacttcggtgaagacaatatggccgactcgcggaggta       
                     atttaaactgctttactaatggcaacctcagtattaggattaa       
                     attgggttacagtattgacgctaacatgaaattggaaaatttg       


DI1              228                        GKSGPWNYNPEEVRAVLEKL       
                                            G  GPWNY+PE++RA+L+KL       
                                            GGVGPWNYHPEDIRAILKKL       
PKMU01008277.1-49799 GTAATGA  Intron 3   CAGggggctatccggacgataac       
                     <0-----[49799:48837]-0>ggtgcgaaacaatgcttaat       
                                            tagatgtttagcatacgaaa       


//
Making a D in phase 1 intron
Making a D in phase 1 intron
>PKMU01008277.1:subseq(1006348,105297).pep
IQKTLILLYVSLHVAVGKILMILFPEMMKRYILKQGQKSSIATNPKFSYENWGPTFFSFK
YLLFVLKVKWKRLEDAAFLGHNAPNTPVADFRGEVHHILDFMQDNRPLVLNFGSCTXPSF
LFKFSEFNRLVEDFNSIADFLIIYIEEAHATDGWAFKNNIIIKNHRNLQDRKTAAQFLLK
ENPLCPVVLDTMENLSSSKYAALPERLYLVQGGKVVYKGGVGPWNYHPEDIRAILKKL
//
>PKMU01008277.1:subseq(1006348,105297).[57481:48775].sp
ATACAAAAGACCTTGATTCTTTTGTATGTATCTCTGCATGTTGCTGTTGGTAAAATTCTG
ATGATATTGTTCCCAGAAATGATGAAAAGATATATTCTAAAACAGGGGCAAAAGAGCAGC
ATAGCCACGAATCCAAAGTTCAGCTATGAGAACTGGGGTCCGACTTTCTTCAGCTTCAAA
TATTTACTCTTTGTTTTGAAAGTGAAGTGGAAAAGGCTGGAAGATGCAGCGTTTTTAGGA
CATAATGCTCCCAACACCCCAGTGGCAGACTTCAGGGGTGAAGTGCATCACATCTTGGAC
TTCATGCAAGACAACAGGCCTTTAGTCCTGAATTTTGGAAGCTGCACCTGACCTTCATTT
CTTTTCAAATTCAGTGAGTTCAACAGGCTTGTTGAAGATTTTAATTCCATAGCAGATTTC
CTTATAATCTATATCGAAGAAGCTCATGCAACAGATGGATGGGCTTTTAAAAACAACATT
ATTATTAAAAATCACCGAAACCTTCAAGATCGAAAAACGGCTGCACAATTTCTTTTGAAG
GAGAATCCTTTATGCCCAGTGGTTTTAGATACTATGGAAAACCTGAGCAGTTCAAAATAC
GCAGCTCTGCCAGAAAGACTTTATCTGGTGCAAGGAGGAAAAGTTGTTTATAAGGGTGGA
GTGGGACCTTGGAATTATCATCCAGAGGACATACGTGCAATCTTGAAAAAACTA
//
PKMU01008277.1:subseq(1006348,105297)	GeneWise	match	57481	48777	307.69	-	.	PKMU01008277.1:subseq(1006348,105297)-genewise-prediction-1
PKMU01008277.1:subseq(1006348,105297)	GeneWise	cds	57481	57172	0.00	-	0	PKMU01008277.1:subseq(1006348,105297)-genewise-prediction-1
PKMU01008277.1:subseq(1006348,105297)	GeneWise	intron	57171	55440	0.00	-	.	PKMU01008277.1:subseq(1006348,105297)-genewise-prediction-1
PKMU01008277.1:subseq(1006348,105297)	GeneWise	cds	55439	55296	0.00	-	2	PKMU01008277.1:subseq(1006348,105297)-genewise-prediction-1
PKMU01008277.1:subseq(1006348,105297)	GeneWise	intron	55295	50000	0.00	-	.	PKMU01008277.1:subseq(1006348,105297)-genewise-prediction-1
PKMU01008277.1:subseq(1006348,105297)	GeneWise	cds	49999	49800	0.00	-	2	PKMU01008277.1:subseq(1006348,105297)-genewise-prediction-1
PKMU01008277.1:subseq(1006348,105297)	GeneWise	intron	49799	48837	0.00	-	.	PKMU01008277.1:subseq(1006348,105297)-genewise-prediction-1
PKMU01008277.1:subseq(1006348,105297)	GeneWise	cds	48836	48777	0.00	-	0	PKMU01008277.1:subseq(1006348,105297)-genewise-prediction-1
//
