SECIS id: 1
helpSECIS image
Predicted by: Infernal (score 10.69)
Covels score: 10.45
Free Energy of structure: -22.69
Target name: your_sequence
Positions on target: 19264-19346 Strand: +
SECIS grade: B
SECIS type: I

  SEQ  UGUGCUAAUUUAAUCAUGAAAUUUACUAGAAUAGCACUUCAGCAGUGCUAUUCUAGUAAAUGGAAAUGUAGCUUGUUACCCUU
  SS   .({({((((.......([[[((((((((((((((((((.....))))))))))))))))))]]]).........))))})}).


------- SECIS element -- id:1 -- grade:B ----
 Chromosome = your_sequence Strand = + Positions = 19264 - 19346
 Found by:  Infernal (score=10.69) Covels (score=10.45)
 Stem2 length = 12   Apical loop length = 17   Insertion in stem2 = 0, 0
 Free Energy = -22.69
 Type = 1

         ..(((((((.......(((((((((((((((...................)))))))))))))))..........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcC----cuuuuuggggcgggccaggcCuGAUGuu-u-uuucaugaccggc
         .({({((((.......([[[((((((((((((((((((.....))))))))))))))))))]]])......-...))))})}).
 target  UGUGCUAAUUUAAUCAUGAAAUUUACUAGAAUAGCACUUCAGCAGUGCUAUUCUAGUAAAUGGAAAUGUAG-CUUGUUACCCUU


                         ****                                         ****                   
>SECIS.1 chromosome:your_sequence strand:+ positions:19264-19346 Type=1
UGUGCUAAUUUAAUCAUGAAAUUUACUAGAAUAGCACUUCAGCAGUGCUAUUCUAGUAAAUGGAAAUGUAGCUUGUUACCCUU