_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 1e-25
 Query name: gi|992185819|ref|XP_015458696.1| PREDICTED: migration and invasion enhancer 1-like [Astyanax mexicanus]
 Query range: 1-118  (total 118)

 Target: /data/www-rg/seblastian_results/426178339/tempfiles/temptarget.fasta
 Chromosome: APWO02000046.1:subseq_779686,101264_ Strand: +
 Positions:
 -Exon 1  35102        35142
 -Exon 2  49972        50126
 -Exon 3  51185        51261
 -Exon 4  52177        52257

 Redox box: no

Query   MEMQVGNVVGYWSC <---Intron---> VGWSCTHSGLILSSPVFSSGGUGYEPRYQELKRVVVAEFPEAAVSGFVGRQG <---Intron---> SF
        |||||||||||||| <  14829bp   > |||||||||||||||||||| ||||||||||||||||||||||||||||| | <   1058bp   > ||
Target  MEMQVGNVVGYWSC                VGWSCTHSGLILSSPVFSSGRUGYEPRYQELKRVVVAEFPEAAVSGFVGRLG                SF
        agacggagggttat                ggtttacagcacttcgttagatgtgcctcgcacgggggtcggggtgtggacg                at
        tatatgattgaggg                tggcgcaggtttcccttcgggggaacgaaatagtttcatcacctcgttggt                ggt
        gggggctggctgc                tgggttacttatcttttcctcaaccgcctggcgatcctgttggggcccccaa                gct
                                                           *                                                

Query   EIEINGQLVFSKLETSGFPYEDD <---Intron---> VMDAIQKAHDGKPVEKITKSQPPCVIL
        ||||||||||||||||||||||| <   915bp    > |||||||||||||||||||||| ||||
Target  EIEINGQLVFSKLETSGFPYEDD                VMDAIQKAHDGKPVEKITKSQPRCVIL
        gagaagctgttatgaagtctggg                gaggacagcggacggaaaaaccctgac
        atatagatttcatacggtcaaaa                ttactaacaagactaatcagacggttt
        gtactaggtcagaacttcttact                agtccgactccgggggccgcggttgtc
                                                                          
 Sequence until next stop: 
TAA
 * 

 Distance CDS-SECIS: 199 ; UGA-SECIS: 445

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = APWO02000046.1:subseq_779686,101264_ Strand = + Positions = 52457 - 52523
 Found by:  Infernal (score=26.64) Covels (score=20.49)
 Stem2 length = 10   Apical loop length = 11   Insertion in stem2 = 0, 0
 Free Energy = -16.7

         ..(((((((.......(((((((((((((((...............)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         .(((((({(---....([[{((((((((((......-..-----...))))))))))}]])..--....)})))))).
 target  CUUUGGACU---UUUAUGAUUACUAUAGCUGAAAGA-AG-----AAAGGCUGUAGUAUGAAAC--UCAUGAUCCAGAC
                         ****           ^^^                       ****