_________________________________.______________________._____________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_blast category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_____________________________________________________________________________

 Blastx evalue: 2e-29
 Query name: gi|992204016|ref|XP_015460784.1| PREDICTED: selenoprotein P [Astyanax mexicanus]
 Query range: 99-335  (total 335)

 Target: /data/www-rg/seblastian_results/801446196/tempfiles/temptarget.fasta
 Chromosome: your_sequence Strand: -
 Positions:
 -Exon 1  50848        51084
 -Exon 2  50210        50389

 Redox box: no

Query   LHSLLEQRLSANITLYGQEPDAQDIWQIANVMKDDFQIYDRCGRLTHHLSLPYTILSGPHVEEAIRNTYCDRTCGECSME <---Intron---> SSIQ
        |||/      /// /     / | |/ | | /     |/ ||||||||||||||||||||||||||||||/||||||||| <   458bp    >     
Target  LHSIYNYYSGSSMNIQFLVLNIQQIYAINNNVFT-INIFPRCGRLTHHLSLPYTILSGPHVEEAIRNTYCERTCGECSME                ----
        tcaatatttgttaaacttgtaaccatgaaaagta-aaatcatgccaccttcctaacagccggggaaaattgaatggttag                ----
        tagtaaaacgcctatattttataatactaaattc-tattcggggtcaatctcacttggcataactgacagagcggagcta                ----
        actcctttagctgttgtaaattggcttatttgta-ttttcattaatccgctccccgtagtgggccaccctaactgactgg                ----
                                                                                                            

Query   PQECNGTVEEKPVVEEEEVGRGHHGGGHHSGHHGGHHGGHHGGHHGGHHGGHHSGHHGHHGDHGGQQRGHHDHEGGSHHQHGHQGQVVISQVQRGQVVHR
                                                                                                     |||||||
Target  ---------------------------------------------------------------------------------------------RGQVVHR
        ---------------------------------------------------------------------------------------------cgcggca
        ---------------------------------------------------------------------------------------------ggattag
        ---------------------------------------------------------------------------------------------gtggtca
                                                                                                            

Query   HTDMGQLGLRHIDLGQVAQEAGNPQVMNQPUAKRSRCKIQYTUQQGGLSQTTS
        |||||||||||||||||||||||||||||||||||||||||||||||||||||
Target  HTDMGQLGLRHIDLGQVAQEAGNPQVMNQPUAKRSRCKIQYTUQQGGLSQTTS
        cagagctgcacagcgcggcgggaccgaacctgactataactatccggctcaaa
        acatgatgtgatatgatcaacgacattaacgcagcggataacgaaggtcaccg
        cacgggacggcacgtaataaatccgggtgcacgccgtgcgccagggttcgccc
                                      *           *          
 Sequence until next stop: 
TGA
 * 

 Distance CDS-SECIS: 1334 ; UGA-SECIS: 1364

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = your_sequence Strand = - Positions = 48875 - 48806
 Found by:  Infernal (score=33.39) Covels (score=22.37)
 Stem2 length = 8   Apical loop length = 18   Insertion in stem2 = 0, 0
 Free Energy = -20.87

         ..(((((((.......(((((((((((((((...............)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         (((((((((---....{[[[((({(((((.......-...........)))))})))]]]}----....)))))))))
 target  UGAUUGGCU---UUCAUGAAGGCCGGUGCAUAAACU-ACGUUCUAGUGGCGCCUGUUGGAU----UUCCAGCCAAUCA
                         ****           ^^^                       ****                 
_________________________________.______________________._____________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:2     SeB_blast category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_____________________________________________________________________________

 Blastx evalue: 2e-29
 Query name: gi|992204016|ref|XP_015460784.1| PREDICTED: selenoprotein P [Astyanax mexicanus]
 Query range: 99-335  (total 335)

 Target: /data/www-rg/seblastian_results/801446196/tempfiles/temptarget.fasta
 Chromosome: your_sequence Strand: -
 Positions:
 -Exon 1  50848        51084
 -Exon 2  50210        50389

 Redox box: no

Query   LHSLLEQRLSANITLYGQEPDAQDIWQIANVMKDDFQIYDRCGRLTHHLSLPYTILSGPHVEEAIRNTYCDRTCGECSME <---Intron---> SSIQ
        |||/      /// /     / | |/ | | /     |/ ||||||||||||||||||||||||||||||/||||||||| <   458bp    >     
Target  LHSIYNYYSGSSMNIQFLVLNIQQIYAINNNVFT-INIFPRCGRLTHHLSLPYTILSGPHVEEAIRNTYCERTCGECSME                ----
        tcaatatttgttaaacttgtaaccatgaaaagta-aaatcatgccaccttcctaacagccggggaaaattgaatggttag                ----
        tagtaaaacgcctatattttataatactaaattc-tattcggggtcaatctcacttggcataactgacagagcggagcta                ----
        actcctttagctgttgtaaattggcttatttgta-ttttcattaatccgctccccgtagtgggccaccctaactgactgg                ----
                                                                                                            

Query   PQECNGTVEEKPVVEEEEVGRGHHGGGHHSGHHGGHHGGHHGGHHGGHHGGHHSGHHGHHGDHGGQQRGHHDHEGGSHHQHGHQGQVVISQVQRGQVVHR
                                                                                                     |||||||
Target  ---------------------------------------------------------------------------------------------RGQVVHR
        ---------------------------------------------------------------------------------------------cgcggca
        ---------------------------------------------------------------------------------------------ggattag
        ---------------------------------------------------------------------------------------------gtggtca
                                                                                                            

Query   HTDMGQLGLRHIDLGQVAQEAGNPQVMNQPUAKRSRCKIQYTUQQGGLSQTTS
        |||||||||||||||||||||||||||||||||||||||||||||||||||||
Target  HTDMGQLGLRHIDLGQVAQEAGNPQVMNQPUAKRSRCKIQYTUQQGGLSQTTS
        cagagctgcacagcgcggcgggaccgaacctgactataactatccggctcaaa
        acatgatgtgatatgatcaacgacattaacgcagcggataacgaaggtcaccg
        cacgggacggcacgtaataaatccgggtgcacgccgtgcgccagggttcgccc
                                      *           *          
 Sequence until next stop: 
TGA
 * 

 Distance CDS-SECIS: 1864 ; UGA-SECIS: 1894

------- SECIS element -- id:2 -- grade:A ----
 Chromosome = your_sequence Strand = - Positions = 48345 - 48276
 Found by:  Infernal (score=32.41) Covels (score=29.33)
 Stem2 length = 11   Apical loop length = 13   Insertion in stem2 = 0, 0
 Free Energy = -17.22

         ..(((((((.......(((((((((((((((...............)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ..(({((((---....{[[((((((((((((.....--........))))))))))))]]}..--..-.))))}))..
 target  UUUAAAUAC---UUAAUGAAGGUUUUCUGGUAAACU--UAACUGAAGCUAGAAAACCUGAUAA--AC-UGUAUAUAUG
                         ****           ^^^                       ****