_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 1e-08
 Query name: gi|1042315436|ref|XP_017351845.1| PREDICTED: selenoprotein Pb-like [Ictalurus punctatus]
 Query range: 2-182  (total 265)

 Target: /data/www-rg/seblastian_results/752962715/tempfiles/temptarget.fasta
 Chromosome: CM008316.1:subseq_19610568,102044_ Strand: -
 Positions:
 -Exon 1  51827        52044
 -Exon 2  50577        50789
 -Exon 3  50021        50132

 Redox box: YES

Query   FRALSALCLASLPSLLWTSPLFVERDNNQSTVCKLAPLWDIDGYSPMNELLGNVVVVALLKASUHFCLTQAAK <---Intron---> LGDLRDKLVRG
         / | ||||//||/||| /||||| ||/ | /|| || |||/|  || /||| | ||||||||| |||||||/ <   1037bp   > || ||||| | 
Target  MQGLLALCLSALPALLWATPLFVEGDNDGSLICKPAPHWDINGQVPMKDLLGKVGVVALLKASUQFCLTQAAR                LGGLRDKLARS
        acgccgctttgccgcctgacctggggaggtcatacgcctgaagcgcaagccgagggggccagatcttcacgga                cggccgacgca
        tagttctgtcctccttgccctttagaaagcttgacccagatagatctaattgatgttcttacggatgtcaccg                tggtgaatcgg
        ggtggtgtgctgtagcggcggcgggcttgagctatcacgcctcgctggtggaaattgtgggccagcccggcc                ggtagttggcgc
                                                                       *                                    

Query   NLTGVAFLIVNEQDAHSRAMYWEMKRRTSEGIPVYQQSPLQSNVWDTLQGDKDDFLVYDR <---Intron---> CGRLTFHIMLPFSILHYPYVEAAV
        ||| | ||/||||||||||||||/||||/|||||/|||||| /||/ |/||||||||||| <   444bp    > ||/|||||/||/| ||/||||||/
Target  NLTDVGFLVVNEQDAHSRAMYWELKRRTAEGIPVFQQSPLQPDVWEALRGDKDDFLVYDR                CGQLTFHIVLPYSYLHHPYVEAAI
        atagggttggagcggctagattgcaaaagggacgtccaccccggtggccggaggttgtgc                tgccatcagcctatcccctgggga
        atcatgttttaaaacacgctagataggccagtcttaagctacatgactggaaaatttaag                ggatctatttcagataacatacct
        cgttgccggacggccctacgcggggaggtgccactggtagggctggcgtacgcctatct                ctcgactcctgactctccccggcca
                                                                                                            

Query   RATYFQNICNCTL
        |||| //|||||/
Target  RATYHRDICNCTV
        agatccgatatag
        gccaagatgagct
        acgccacccccag
                     
 Sequence until next stop: 
AGCATATATCTCTTAATATCTCTGAAAATGAAGTGTTCAATGCAAAAAAAAATCAAACATCACACCGATATTTGA
 S  I  Y  L  L  I  S  L  K  M  K  C  S  M  Q  K  K  I  K  H  H  T  D  I  * 

 Distance CDS-SECIS: 1272 ; UGA-SECIS: 1623

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = CM008316.1:subseq_19610568,102044_ Strand = - Positions = 48748 - 48678
 Found by:  Infernal (score=30.41) Covels (score=29.67)
 Stem2 length = 9   Apical loop length = 16   Insertion in stem2 = 0, 0
 Free Energy = -17.99

         ..(((((((.......(((((((((((((((...............)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ....((((((--(...{[[[(((((((({(......-..........)}))))))))]]]}..--)--))))))....
 target  CUCAUAGCUC--UUAAUGAAGUGUGCACUUCAAACC-UGUCUCAGGUGUGUGCAUGCGGAUGU--G--GAGCUGGAUC
                         ****           ^^^                       ****