_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 9e-12
 Query name: gi|1043260120|ref|NP_001316366.1| ethanolaminephosphotransferase 1 [Danio rerio]
 Query range: 1-400  (total 400)

 Target: /data/www-rg/seblastian_results/461582756/tempfiles/temptarget.fasta
 Chromosome: CM008314.1:subseq_8650905,105266_ Strand: +
 Positions:
 -Exon 1  47848        47904
 -Exon 2  50006        50074
 -Exon 3  50795        50903
 -Exon 4  51157        51231
 -Exon 5  51948        52210
 -Exon 6  52731        52839
 -Exon 7  53016        53064
 -Exon 8  53201        53381
 -Exon 9  54106        54288
 -Exon 10 55162        55266

 Redox box: no

Query   MALYHYVTQEQLSGFDKYK <---Intron---> YSAVDSNPLSIYVMHPFWNSVVK <---Intron---> VLPTWLAPNLITFTGFMFLVLTFTML
        |||| |||||||/|||||| <   2101bp   > |||||/||||/|||||||||/|| <   720bp    > ||||||||||||||||||||| | /|
Target  MALYEYVTQEQLAGFDKYK                YSAVDTNPLSVYVMHPFWNSMVK                VLPTWLAPNLITFTGFMFLVLNFVIL
        agctgtgacgccggtgata                tagggaacctgtgaccttataga                gtcattgcacaatagtatcgcatgac
        tctaaatcaaatcgtaaaa                agctacactctattactgactta                ttccgtccattctcgttttttatttt
        gtctatgcgggcggttgtg                ctagcccggccttgctcgctggg                tgcaggaatgagctccgcgggccccc
                                                                                                            

Query   SFFDFDFYASG <---Intron---> EGHTHVPSWVWIAAGLFNFLAYTLD <---Intron---> GVDGKQARRTNSSTPLGELFDHGLDSWACVFF
        | /|||||||  <   253bp    > |||/|||||||||||||||/||||| <   716bp    > ||||||||||||||||||||||||||||||||
Target  SLYDFDFYASA                EGHSHVPSWVWIAAGLFNFIAYTLD                GVDGKQARRTNSSTPLGELFDHGLDSWACVFF
        tttgtgttgtg                ggctcgcatgtagggctatagtatg                ggggacgcaaataaccggctgcgtgatgtgtt
        ctaatatacc                cagacatcggtgtccgttattcact                agtagaacggcacgcctgattaagtaggcgttt
        ggttttccca                tgtcgcgctgcgcgttcttcagcaa                ttgctagccggcccttggggttcggtcggtgcc
                                                                                                            

Query   VATVYSVFGRGETGVSVVTLYYLLWVVLFSFILSHWEKYNTGILFLPWGYDISQV <---Intron---> TISIVYIITAVVGVETWYKPVFLNIHYRD
        | //||||||| /||||/||||||||||||||||||||||||/||||||||/||| <   520bp    > |||||||||||||||||//||   |||||
Target  VCSMYSVFGRGASGVSVITLYYLLWVVLFSFILSHWEKYNTGVLFLPWGYDLSQV                TISIVYIITAVVGVETWFEPVIWQIHYRD
        gttattgtgcggaggagaacttcctggctttactctgataaggctcctgtgcacg                aatagtaaaggggggattgcgatcactag
        tgctacttgggcggtgttctaattgttttctttcagaaaacgttttcggaatgat                ctcttattccttgtacgtacttgataaga
        gccgcggttcggccccgcgcccgcgccccccccacggacccccccgcgcccccag                atttgtaaaggtaggggcgggtgacccat
                                                                                                            

Query   LFTVMIIG <---Intron---> CLFVVTLPMSLYNVFK <---Intron---> AYRNNTLKHSSLYEALLPFFSPVLLFVLSTLWISFSPTNIVQKQ
        || |||/| <   176bp    > ||| |||||||||| | <   136bp    > |||||||||||||||||||||| |||/|||||/| || /|// |
Target  LFIVMILG                CLFAVTLPMSLYNVLK                AYRNNTLKHSSLYEALLPFFSPALLFILSTLWVSLSPNHILELQ
        ctagaacg                tctggatcaactagca                gtaaaacacatttggccctttcgcctactactgactcacacgcc
        ttttttt                ggttctctctgtaatta                cagaactaagctaacttcttccctttttcctgtgtccaattata
        gcccgcg                acgctaagagcctcca                ggtaccaggcctacgtcgccccggccccccaggcttcctccgggg
                                                                                                            

Query   PRIFYLMVGTAFSNVT <---Intron---> CKLIVCQMSNTRCKPLSLLLLPMSIVVLLVISGTVQGGESLVLFIWTAVVLLTHIHYGVSV <---In
        ||||||||||||/||| <   724bp    > |||||||||||||/||| ||/||//||/||/|| ||  |///|// ||||/  |||||||| <   87
Target  PRIFYLMVGTAFANVT                CKLIVCQMSNTRCEPLSWLLVPMAVVVVLVLSGVVQQSEAVLLYVCTAVVVFMHIHYGVSV       
        caattcaggagtgaga                tacagtcaaaactgccatccgcagggggcgctgggccagggcctgtaggggtacactggtg       
        cgttatttgcctcatc                gatttgatgacggactggtttctctttttttcgttaagactttatgcctttttataagtct       
        cgcccgggagccccct                tggcgtggtttgtgggtgggggggggggggcggggggtgggggcgtgtggtcgcacccgtg       
                                                                                                            

Query   tron---> VKQLSDHFNIFAFSLKKPNSDUQDEEKIGLKAAEV
        3bp    > ||||||||||||||||||/||||||/|||| ||||
Target           VKQLSDHFNIFAFSLKKPSSDUQDEQKIGLTAAEV
                 gactagctaatgttcaacatgtcggcaagcagggg
                 taatgaatattctctaacgcagaaaaatgtcccat
                 ggggctcctctgctggggttcagcgggcccgtagt
                                      *             
 Sequence until next stop: 
TAA
 * 

 Distance CDS-SECIS: 1117 ; UGA-SECIS: 1156

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = CM008314.1:subseq_8650905,105266_ Strand = + Positions = 56384 - 56455
 Found by:  Infernal (score=29.14) Covels (score=25.77)
 Stem2 length = 11   Apical loop length = 16   Insertion in stem2 = 0, 0
 Free Energy = -19.29

         ..(((((((.......(((((((((((((((................)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcC-cuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ..((((([(.--....([[[(((((((((((................)))))))))))]]])----..-.)])))))..
 target  UAUUUGCGCU--UGAAUGAAGAGUGCGCUUCAAAGCCUGUCCAGGAGGGGGCGCACUCGGAG----UG-UGAGCGGGCC
                         ****           ^^^                        ****