________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 4e-23
 Query name: gi|992180469|ref|XP_015457390.1| PREDICTED: selenoprotein H [Astyanax mexicanus]
 Query range: 1-128  (total 128)

 Target: /data/www-rg/seblastian_results/193922431/tempfiles/temptarget.fasta
 Chromosome: your_sequence Strand: -
 Positions:
 -Exon 1  52239        52260
 -Exon 2  50952        51066
 -Exon 3  50561        50703
 -Exon 4  49994        50097

 Redox box: YES

Query   MPPRAKAG <---Intron---> RGAKRKVDAVVESEPEAKKDKTTDAEQDEGQRVVIEHC <---Intron---> KSURVYGRNADMVREALLAVHP
        |||||||| <   1172bp   > |||||||||||||||||||||||||||||||||||||| <   248bp    > ||||||||||||||||||||||
Target  MPPRAKAG                RGAKRKVDAVVESEPEAKKDKTTDAEQDEGQRVVIEHC                KSURVYGRNADMVREALLAVHP
        acccgagg                cggacaggggggtgcggaagaaagggcgggcaggagct                aatcgtgcaggagcggccggcc
        tccgcac                gggcagatacttacacacaaaaccacaaaagagtttaag                agggtaggacattgacttctac
        gttctaa                ttgagcggtttggggagaggtaaatcagcacaagccac                tacaagttgtccgctgtcgtatc
                                                                                        *                   

Query   ELRVVLNPQKPRRNSFEVTLMEGDKE <---Intron---> VVLWTGIKKGPPRKLKFPDPAEVVTVLGDALKSN
        |||||||||||||||||||||||||| <   463bp    > ||||||||||||||||||||||||||| ||||||
Target  ELRVVLNPQKPRRNSFEVTLMEGDKE                VVLWTGIKKGPPRKLKFPDPAEVVTVLDDALKSN
        gccggcaccacccaatggacagggag                ggctagaaagcccacatcgcggggagcgggcaaa
        atgtttacaacggagtatcttagaa                atttgcgtaagccgatatcaccattcttaactaga
        ggtggcccggttacctgccagaaca                ggccgtccggttctaaatatttgtgtgtttcggcc
                                                                                    
 Sequence until next stop: 
TAG
 * 

 Distance CDS-SECIS: 187 ; UGA-SECIS: 424

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = your_sequence Strand = - Positions = 49806 - 49732
 Found by:  Infernal (score=29.04) Covels (score=27.69)
 Stem2 length = 10   Apical loop length = 17   Insertion in stem2 = 0, 0
 Free Energy = -13.83

         ..(((((((.......(((((((((((((((...............))))))))))))))).........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuu-uuucaugaccggc
         ..(({((((---....{[[{((((((((((.................))))))))))}]]}.....-...))))}))..
 target  UAUGUAUGC---AUAAUGAUGAGGAUGGACCAAAUGGACGACUUCCAGUCUGUUCUCUGAUGUUUU-UUGGCAUCUAGA
                         ****           ^^^                       ****