Blastx evalue: 1e-51
 Query name: gi|992211225|ref|XP_007250011.2| PREDICTED: selenide, water dikinase 1-like [Astyanax mexicanus]
 Query range: 1-449  (total 449)

 Target: /data/www-rg/seblastian_results/520323769/tempfiles/temptarget.fasta
 Chromosome: CM008314.1:subseq_24270017,107850_ Strand: -
 Positions:
 -Exon 1  57598        57904
 -Exon 2  55722        55825
 -Exon 3  55372        55479
 -Exon 4  53913        54067
 -Exon 5  53688        53778
 -Exon 6  53476        53575
 -Exon 7  52943        53155
 -Exon 8  49988        50256

 Redox box: no

Query   MSRSDPPSPPAESCGAGAYLPFYPAGYQALHPEEHGLDRAFRLTAFSDMKGUGCKVPQETLLKLLQGLEPDRPAGEDGRTGEAGDEVSEFGQLASGAHGP
        |||||||||||||||||||||||||||||||||||||/||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Target  MSRSDPPSPPAESCGAGAYLPFYPAGYQALHPEEHGLERAFRLTAFSDMKGUGCKVPQETLLKLLQGLEPDRPAGEDGRTGEAGDEVSEFGQLASGAHGP
        atctgcctccggttggggtccttcggtcgcccggcgcgcgtccagttgaagtgtagccgaccacccgcgcgccgggggaagggggggtgtgccgtggcgc
        tcgcaccccccacggcgcatctaccgaactacaaagtagctgtcctcataggggatcaacttattagtacagccgaaggcgacgaatcatgatccgcagc
        gttacggcggtggcagccccctcgctcgttcgggccggcctccgccccggaactacgggtgcacggaggcccggggcggcagcgcggtgcggctgtatac
                                                           *                                                

Query   RLG <---Intron---> IGMDSCVIPLRHGGLSLIQTTDFFYPLVEDPYMM <---Intron---> GRIACANVLSDLYAMGITECDNMLMLLSVSQ
        ||| <   1772bp   > |||||||||||||||||||||||||||||||||| <   242bp    > |||||||||||||||||||||||||||||||
Target  RLG                IGMDSCVIPLRHGGLSLIQTTDFFYPLVEDPYMM                GRIACANVLSDLYAMGITECDNMLMLLSVSQ
        ccg                agagttgactacggttcacaagtttctgggctaa                gcagtgagcagctgagaagtgaacaccagac
        gt                gtgtacgttctgaggtcttaccattacttaacatt                ggtcgcattgatactgtcagaatttttgtga
        ga                ttggtttcctggtatgcgcatatccctatattcgg                taactatggtcgccgcctgttcggggtcccg
                                                                                                            

Query   KMNEK <---Intron---> EREVVMPLMMKGFRDAAEEGGTSVTGGQTVMNPWIIVGGVATVVCQPNDFIM <---Intron---> PDSAVPGDVLV
        ||||| <   1304bp   > |||||||||||||||||||||||||||||||||||||||||||||||||||| <   134bp    > |||||||||||
Target  KMNEK                EREVVMPLMMKGFRDAAEEGGTSVTGGQTVMNPWIIVGGVATVVCQPNDFIM                PDSAVPGDVLV
        aaaga                gcgggactaaagtcgggggggatgaggcagaactaagggggaggtccagtaa                cgaggcgggcg
        ataaa                agatttctttagtgaccaaggcctcggacttacgtttggtccttgacaattt                cagctcgattt
        ggtag                ggggggcagggccttttagtgtaggtcgtcgccgctattggtggtactccc                gacttaaatggt
                                                                                                            

Query   LTKPLGTQVAVNAHQWMDI <---Intron---> PEKWNKIKLVITKEEVEQAYQEAMLNMATLNRTA <---Intron---> AALMHKFNAHAATDI
        ||||||||||||||||||| <   112bp    > |||||||||||||||||||||||||||||||||| <   320bp    > |||||||||||||||
Target  LTKPLGTQVAVNAHQWMDI                PEKWNKIKLVITKEEVEQAYQEAMLNMATLNRTA                AALMHKFNAHAATDI
        caaccgacgggagcctaga                cgataaaacgaaaggggcgtcggacaagacacag                ggcacatagcggaga
        tcactgcatctacaagtat                caagaatatttcaaataacaaacttatcctagc                cccttaatacacccat
        ccattacgcgctttaggca                taagcgcaggaaggggaattggcgccgcaccca                ttaagcgccgtcctct
                                                                                                            

Query   TGFGIMGHARNLAKQQRNDVAFVIHNLPIIAKMAAISKAGGNLFGLLQGTSSETSG <---Intron---> GLLICLPREQAARFCAEMKASRSSSLGQ
        |||||/|||||||||||||||||||||||||||||||||||||||||||||||||| <   2686bp   > ||||||||||||||||||||||||||||
Target  TGFGIIGHARNLAKQQRNDVAFVIHNLPIIAKMAAISKAGGNLFGLLQGTSSETSG                GLLICLPREQAARFCAEMKASRSSSLGQ
        agtgaagcgcatgacccagggtgacaccaagaaggaaagggactgcccgattgatg                gctattccgcggcttggaagacattcgc
        cgtgttgacgatcaaagaatctttaatcttcatcctgacggattgttagcccacc                ggtttgtcgaaccgtgcatacgggcctga
        tctgccgcagtacgggcccgccccccgcctcggcaccgagaccttgggatcagaa                tgtgccgggagcacctaggggcgcggggg
                                                                                                            

Query   EGGVGDGQQAWIIGIVEKGNRCARIIDKPRIIEVPYRGAVANTQEGNNNNASPPEVQPTQV
        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Target  EGGVGDGQQAWIIGIVEKGNRCARIIDKPRIIEVPYRGAVANTQEGNNNNASPPEVQPTQV
        gggggggccgtaagaggagactgcaagaccaaggctcggggaacggaaaagaccggccacg
        aggtgagaacgttgttaagaggcgttaacgttatcaggctcacaagaaaacgccataccat
        gacgtcgggcgccccgggctccttcccgactaggcctataccgggccctcccttgagccga
                                                                     
 Sequence until next stop: 
TAG
 * 

 Distance CDS-SECIS: 1957 ; UGA-SECIS: 3148

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = CM008314.1:subseq_24270017,107850_ Strand = - Positions = 48030 - 47948
 Found by:  Infernal (score=38.19) Covels (score=32.84)
 Stem2 length = 11   Apical loop length = 18   Insertion in stem2 = 0, 0
 Free Energy = -30.63

         ..(((((((.......((((((((((.(((((..................))))).))))))))))...........)))))))..
 model   uucggucaugcgUuaAUGAcGgccug-gcccuAAAcC---cuuuuuggggcgggc-caggcCuGAUGuu--u-uuucaugaccggc
         (((((((((.--....{[[{(({(((((((((..................)))))))))}))}]]}.......-...)))))))))
 target  GCUCCUCCUG--CUCAUGAUGCCUUUCCCUCUAAACCCCAAAAAAUGGGGGGAGGGAGAAGCUGAUGUUACUG-GAAAGGAGGAGC
                         ****            ^^^                           ****