Blastx evalue: 2e-19
 Query name: gi|992223655|ref|XP_015463785.1| PREDICTED: selenoprotein M-like [Astyanax mexicanus]
 Query range: 1-134  (total 134)

 Target: /data/www-rg/seblastian_results/722388055/tempfiles/temptarget.fasta
 Chromosome: your_sequence Strand: +
 Positions:
 -Exon 1  46882        46986
 -Exon 2  50006        50082
 -Exon 3  51180        51258
 -Exon 4  57095        57235

 Redox box: no

Query   MKLLLLLLLTFRAAQNTSRTPAGPEKLIIARGKLL <---Intron---> APSLVGUSIKKMPELYTFLMERWALY <---Intron---> HNLEYDS
        ||||||||||| ||||||||||||||||||||||| <   3019bp   > |||||||||||||||||||||||||| <   1097bp   > |||||||
Target  MKLLLLLLLTFSAAQNTSRTPAGPEKLIIARGKLL                APSLVGUSIKKMPELYTFLMERWALY                HNLEYDS
        aacccccccataggcaaacacggcgacaagagacc                gcatggttaaaacgctatcagctgct                cacgtgt
        tatttttttctgccaacggcccgcaatttcggatt                ccgttggctaatcatactttaggcta                aataaac
        ggcagggcgcccctgcccgcaccgaactacaaagg                tgtggaatagggtgccccgggcgtg                tttagcta
                                                                 *                                          

Query   GEDKKPRLIFYNDKEEVVM <---Intron---> TVPVKKMKADEISNLLDSLGFYKRSKKGEEVPEEFQNFPLKAPRDEL
        ||||||||||||||||||| <   5836bp   > |||||||||||||||||||||||||||||||||||||||||||||||
Target  GEDKKPRLIFYNDKEEVVM                TVPVKKMKADEISNLLDSLGFYKRSKKGEEVPEEFQNFPLKAPRDEL
        gggaacccattagagggga                agcgaaaagggaaaccgtcgttaataaggggcggtcatccagccggc
        gaaaacgtttaaaaaattt                ctctaatacaatgattactgtaagcaagaatcaataatctaccgaat
        aacgaccgcccccgggggg                atagggggatgcttcactgcctggagacgactgacgcctggtaacag
                                                                                          
 Sequence until next stop: 
TGA
 * 

 Distance CDS-SECIS: 30 ; UGA-SECIS: 306

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = your_sequence Strand = + Positions = 57266 - 57350
 Found by:  Infernal (score=19.41) Covels (score=21.64)
 Stem2 length = 9   Apical loop length = 21   Insertion in stem2 = 1, 0
 Free Energy = -21.86
 Type = 1

         ..(((((((.......((((((((((.(((((...................)))))))))))))))...........)))))))..
 model   uucggucaugcgUuaAUGAcGgccug-gcccuAAAcC----cuuuuuggggcgggccaggcCuGAUGuu--u-uuucaugaccggc
         (((((({(((......([[{((((((.({((.....................))})))))))}]]).......-..)))}))))))
 target  UGCACCCAGCAAAUAAUGACGCCCAGGACCCCAAGACCUUCAAACCGGGUCAGGCUCUGGGCCGAGACUCUGA-CGGCUUGGUGUA
                         ****            ^^                            ****