_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 6e-37
 Query name: gi|992193039|ref|XP_015459758.1| PREDICTED: methionine-R-sulfoxide reductase B1-A-like, partial [Astyanax mexicanus]
 Query range: 1-104  (total 104)

 Target: /data/www-rg/seblastian_results/865466163/tempfiles/temptarget.fasta
 Chromosome: your_sequence Strand: +
 Positions:
 -Exon 1  49955        50146
 -Exon 2  50446        50565

 Redox box: no

Query   IVIVILCVTYSLFSVAGKYVCAKCGYELFSSKTKYEHSTPWPAFTEPIHEDSISKVEERWGAYK <---Intron---> VSCGKCGNGLGHEFVNDGPK
        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| <   299bp    > ||||||||||||||||||||
Target  IVIVILCVTYSLFSVAGKYVCAKCGYELFSSKTKYEHSTPWPAFTEPIHEDSISKVEERWGAYK                VSCGKCGNGLGHEFVNDGPK
        agagattgatacttgggatgtgatgtgcttaaaatgctactcgtagcacggaatagggatggta                gatgatgagcgcgtgaggca
        ttttttgtcagttctcgaatgcaggaattcgacaaaacccgcctcactaaagtcataagggcaa                tgggaggagtgaattaagca
        agagtgtaaccgcttatatgtagtccatcacgtacgccccgccccgcccgccccagggagaacg                cttagtttcgtcgtactaca
                                                                                                            

Query   HGVSRFUIFSSSLKFIPKGI
        ||||||||||||||||||||
Target  HGVSRFUIFSSSLKFIPKGI
        cggtcttataatcatacaga
        agtcgtgttggctattcagt
        taccataacccacgcctatt
              *             
 Sequence until next stop: 
TAG
 * 

 Distance CDS-SECIS: 1148 ; UGA-SECIS: 1187

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = your_sequence Strand = + Positions = 51714 - 51794
 Found by:  Infernal (score=23.47) Covels (score=19.23)
 Stem2 length = 10   Apical loop length = 16   Insertion in stem2 = 1, 0
 Free Energy = -18.88

         ..(((((((........((((((((((((.(((................))))))))))))))).........)))))))..
 model   uucggucaugcg-UuaAUGAcGgccuggc-ccuAAAcC-cuuuuuggggcgggccaggcCuGAUGuuu-uuucaugaccggc
         (((((({((........([[(((((({((.(((................)))))}))))))]]).....-...))}))))))
 target  CCGGGGUAGACGUUCCAUGAAGUGUUGUGUGAUAAAGCCCACAGUGGACGUUCAGAACGCUGAAGCUCG-CGGCUUCCCUGG
                          ****            ^^^                        ****