Blastx evalue: 5e-29
 Query name: gi|992181180|ref|XP_007287864.2| PREDICTED: phospholipid hydroperoxide glutathione peroxidase, mitochondrial [Astyanax mexicanus]
 Query range: 1-191  (total 191)

 Target: /data/www-rg/seblastian_results/136945406/tempfiles/temptarget.fasta
 Chromosome: CM008316.1:subseq_8716454,103069_ Strand: -
 Positions:
 -Exon 1  57823        57888
 -Exon 2  54684        54778
 -Exon 3  52923        53067
 -Exon 4  51152        51303
 -Exon 5  50148        50172
 -Exon 6  50003        50062
 -Exon 7  48939        48968

 Redox box: no

Query   MQLVRQALLLGLLGGKGFSRAM <---Intron---> CAQANDWKSAKSIYEFSAKDIDGNEVSLEKYR <---Intron---> GFVCIITNVASKUG
        |||||||||||||||||||||| <   3044bp   > |||||||||||||||||||||||||||||||| <   1616bp   > ||||||||||||||
Target  MQLVRQALLLGLLGGKGFSRAM                CAQANDWKSAKSIYEFSAKDIDGNEVSLEKYR                GFVCIITNVASKUG
        actgccgcccgccggagtaaga                tgcgagtaagatatgttgagaggaggttgata                gtgtaaaaggtatg
        tattgactttgttggagtggct                gcacaagagcactaatccaatagaatctaaag                gttgttcatccagg
        ggactgggtggggtaacccacg                tcgctcggccgtttgctcacatacggtggac                gccccccaccctaaa
                                                                                                          * 

Query   KTPVNYTQFAAMHATYAEKGLRILGFPCNQFGKQ <---Intron---> EPGTEAEIKEFAKGYNAEFDLFSKIDVNGDNAHPLWKWLKDQPKGRGTLG
        |||||||||||||||||||||||||||||||||| <   1619bp   > ||||||||||||||||||||||||||||||||||||||||||||||||||
Target  KTPVNYTQFAAMHATYAEKGLRILGFPCNQFGKQ                EPGTEAEIKEFAKGYNAEFDLFSKIDVNGDNAHPLWKWLKDQPKGRGTLG
        aacgatactggacgatggagtcacgtctactgac                gcgagggaagtgagtaggtgctaaaggaggagccctattagccagagacg
        acctaacatcctaccacaagtgttgtcgaatgaa                acgcacataatcagaacatattgatatagaacactgagtaaacagggctg
        gttacctgtgcgccgctgataccgcccccgtagg                gtgaatgtggtgacccagtccctgctgtgttcttggggagtgagaactca
                                                                                                            

Query   N <---Intron---> NIKWNFTK <---Intron---> FLINKEGQVVKRYGPMDDPS <---Intron---> VVEKDLPNYL
        | <   979bp    > |||||||| <    85bp    > |||||||||||||||||||| <   1034bp   > ||||||||||
Target  N                NIKWNFTK                FLINKEGQVVKRYGPMDDPS                VVEKDLPNYL
        a                aaatataa                tcaaaggcggactgcaggca                gggagccatc
        a                atagatca                tttaaagattagagctaacg                ttaaatcaat
                        cccagttcg                tcccaaagtgggcaagttat                ttagtgatcg
                                                                                               
 Sequence until next stop: 
TAG
 * 

 Distance CDS-SECIS: 98 ; UGA-SECIS: 470

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = CM008316.1:subseq_8716454,103069_ Strand = - Positions = 48840 - 48768
 Found by:  Infernal (score=33.53) Covels (score=32.52)
 Stem2 length = 9   Apical loop length = 19   Insertion in stem2 = 0, 0
 Free Energy = -13.61

         ..(((((((.......(((((((((((((((...............)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         .({({(({(.--....{[[{(((((((((...................)))))))))}]]}..--..-.)}))})}).
 target  UUUUCCCAGA--AUAAUGACGGCCUUUCCCUAAACCUGACCCCAGGUAGGAAGGGCCUGAUGA--CC-CUAGGCGUGC
                         ****           ^^^                       ****