Blastx evalue: 2e-28
 Query name: gi|992215507|ref|XP_015462191.1| PREDICTED: phospholipid hydroperoxide glutathione peroxidase, mitochondrial-like isoform X2 [Astyanax mexicanus]
 Query range: 1-186  (total 186)

 Target: /data/www-rg/seblastian_results/17582066/tempfiles/temptarget.fasta
 Chromosome: CM008304.1:subseq_12287764,100802_ Strand: +
 Positions:
 -Exon 1  48870        48920
 -Exon 2  49037        49131
 -Exon 3  50008        50152
 -Exon 4  50653        50804
 -Exon 5  51361        51385
 -Exon 6  52612        52671
 -Exon 7  52794        52823

 Redox box: no

Query   MRLLSSAVLFSVVLQAM <---Intron---> AAQLEDWQTATSIYDFSAIDIDGNEVSLDKYR <---Intron---> GKVVIITNVASKUGKTPIN
        ||||||||||||||||| <   116bp    > |||||||||||||||||||||||||||||||| <   876bp    > |||||||||||||||||||
Target  MRLLSSAVLFSVVLQAM                AAQLEDWQTATSIYDFSAIDIDGNEVSLDKYR                GKVVIITNVASKUGKTPIN
        acccatggcttggccga                ggctggtcagatatgtagagaggaggtcgata                gaggaaaaggtatgaacaa
        tgttgcctttctttact                ccataagacccctaatgctatagaatctaaag                gattttcatccaggaccta
        gccaccgggccggggag                cggggcgggggcctcctcttttctagcgcac                gtagcctccttcaacaccac
                                                                                                     *      

Query   YSQFAEMHAKYAEKGLAILAFPSNQFGNQ <---Intron---> EPGSNAQIKEFAKSYNAQFDMFGKIDVNGADAHPLWKWLKSQPNGKGFLGN <--
        ||||||||||||||||||||||||||||| <   500bp    > ||||/|||||||||||||||||||||||||||||||||||||||||||||| <  
Target  YSQFAEMHAKYAEKGLAILAFPSNQFGNQ                EPGSSAQIKEFAKSYNAQFDMFGKIDVNGADAHPLWKWLKSQPNGKGFLGN    
        ttctggacgatggagtgacgtctactgac                gcgtagcaagtgattagctgatgaaggaggggccctatcaaccagagtcga    
        acatcatacaacaagtcttctccaatgaa                acgcgcataatcacaacatattgatatagcacactgagtagacagagttga    
        ctgtaggccgctgataccgccaccgtatg                aacctaacaatggtccagtcgccgttgtgcctttggggggcgctcaacga     
                                                                                                            

Query   -Intron---> GIKWNFTK <---Intron---> FLINREGQVMKRYSPMSDPS <---Intron---> VVEKDLPKYL
         556bp    > |||||||| <   1226bp   > |||||||||||||||||||| <   122bp    > ||||||||||
Target              GIKWNFTK                FLINREGQVMKRYSPMSDPS                VVEKDLPKYL
                    gaatataa                tcaacggcgaaattcaagca                gggagccatc
                    gtagatca                tttagagattagacctgacg                ttaaatcaat
                   tacggcctg                cgtctgcgtggactagttat                ggagtgcatg
                                                                                          
 Sequence until next stop: 
TAG
 * 

 Distance CDS-SECIS: 70 ; UGA-SECIS: 442

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = CM008304.1:subseq_12287764,100802_ Strand = + Positions = 52894 - 52970
 Found by:  Infernal (score=35.98) Covels (score=43.52)
 Stem2 length = 9   Apical loop length = 20   Insertion in stem2 = 0, 0
 Free Energy = -13.35

         ..(((((((.......(((((((((((((((................)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcC-cuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ....(({[((((....{[[{(((((((((....................)))))))))}]]}..--.))))]}))....
 target  UCAAACCAUGGACUAAUGACGGUCUGUCUGGAAACCCGUCGUACGGAAAGGACAGACCUGAUGC--AUUUGGCGUGCAA
                         ****           ^^^                        ****