Blastx evalue: 4e-41
 Query name: gi|1042373494|ref|XP_017331092.1| PREDICTED: glutathione peroxidase 2 [Ictalurus punctatus]
 Query range: 2-210  (total 210)

 Target: /data/www-rg/seblastian_results/249411898/tempfiles/temptarget.fasta
 Chromosome: CM008308.1:subseq_1389295,101664_ Strand: -
 Positions:
 -Exon 1  51443        51715
 -Exon 2  49994        50344

 Redox box: no

Query   TCMPEGSRHTSGGHQRRIMTFIAKMFYDLRATTLEGDSIDFNVYRGRVVLIENVASLUGTTTRDYSQLNQLQSRYPHRFVVLAFPCNQFGYQ <---Int
        ||/  | |  |||    ||||||| |||||||||||/|/||||/|||||||||||||||||||||||||||||||||| ||| ||||||||| <   109
Target  TCVTVGKRQCSGG-PVWIMTFIAKTFYDLRATTLEGESVDFNVFRGRVVLIENVASLUGTTTRDYSQLNQLQSRYPHRLVVLGFPCNQFGYQ        
        atgaggaactagg-cgtaaatagaattgccgaacgggtggtagtagcggcagaggtctgaaacgtaccacccaatccccggcgtctactgtc        
        cgtctgagagggg-ctgttcttcactaatgccctagactatattgggttttaatcctggcccgaagataataggacagttttgtcgaatgaa        
        ccgatggagttaa-aggaggcacgccccgttagggaacctttgcaaggggtgtgaccatgccgcccgccgcgcgcacgggcgccctcgtccg        
                                                                 *                                          

Query   ron---> ENCRNGEILNSLKHVRPGGGFEPLFTIFEKCDVNGASTHPVFAYLKDKLPYPDDDPVSLIQDPKFLVWSPISRTDISWNFEKFLIGPEGEPF
        8bp   > ||| |||||||||||||| |/|| ||||||||||| /||||||||||||||||||||| /||||||||||/||||/||||||||||||||||
Target          ENCTNGEILNSLKHVRPGAGYEPGFTIFEKCDVNGVNTHPVFAYLKDKLPYPDDDPVSFVQDPKFLVWSPVSRTDVSWNFEKFLIGPEGEPF
                gataaggacatcacgacgggtgcgtaatgatggaggaaccgtgtcagacctcgggcgttgcgcatcgtacgacaggttatgatcagcgggct
                aagcagattactaatgcgcgaacgtcttaagatagtacacttcataaatcacaaactcttaacatttggctggcatcgataatttgcagact
                accctaacgccggcggaaaacatacctcggtcgtgcctccccccggcacactcccgcccggccactggccccgtcctgttggcctctacggc
                                                                                                            

Query   KRYSKNFETINIEPDIQRLLRLTKN
        ||||| |||| ||||||||||||||
Target  KRYSKKFETIAIEPDIQRLLRLTKN
        aataaatgaagagcgacatcataaa
        agagaatactctacatagttgtcaa
        gaccagcgctccacccgaagagcgc
                                 
 Sequence until next stop: 
TAA
 * 

 Distance CDS-SECIS: 1227 ; UGA-SECIS: 1680

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = CM008308.1:subseq_1389295,101664_ Strand = - Positions = 48766 - 48689
 Found by:  Infernal (score=31.71) Covels (score=26.58)
 Stem2 length = 10   Apical loop length = 10   Insertion in stem2 = 0, 0
 Free Energy = -18.35

         ..(((((((.........(((((((((((((((...............)))))))))))))))............)))))))..
 model   uucggucaugcg--UuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuu---u-uuucaugaccggc
         .((({((((.........([[((({((((((((........-----..))))))))})))]])........-...))))}))).
 target  UUCUCUUAUUUUACUUAAUGAGGGCGAUGCCCUAAACCUUA-----AAGGGGCAUCAUCUGAGACGCUGUA-AAUAUAAAAGAC
                           ****           ^^^                       ****