Blastx evalue: e-159
 Query name: gi|992174839|ref|XP_015463382.1| PREDICTED: thyroxine 5-deiodinase-like [Astyanax mexicanus]
 Query range: 1-275  (total 275)

 Target: /data/www-rg/seblastian_results/619925420/tempfiles/temptarget.fasta
 Chromosome: CM008302.1:subseq_43210598,100776_ Strand: +
 Positions:
 -Exon 1  49973        50797

 Redox box: no

Query   MPDVQELARAHATKALRSAAVCVLLLPRFLLAALLLWLLDFLCIRRKVLARMREHESADGADGADEPAVRVSDSNRMFTLASLRAVWHGHKLDFFKTARV
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Target  MPDVQELARAHATKALRSAAVCVLLLPRFLLAALLLWLLDFLCIRRKVLARMREHESADGADGADEPAVRVSDSNRMFTLASLRAVWHGHKLDFFKTARV
        acggcgcgcgcgaagccagggtgccccctccggccctccgtctaccagcgcacgcgagggggggggcggcgtgtaaatacgtccggtcgcacgttaagcg
        tcataatcgcaccactggcctgttttcgtttcctttgttattgtggattcgtgaaagcagcagcaacctgtcacagttctcctgctgagaatattaccgt
        ggcgggggcgcgcggcgcgggcgggggccgccggccgtactgctgaggcggggacgcgcggcctcggggcgccgcggcggcggcgggcccggcccgggcc
                                                                                                            

Query   GAAAPNSEVVPLAEHKRARILDYARGRRPLILNFGSCSUPPFMRRLAAFRRLADQYADIADSLLVYIEEAHPSDGWASSDAPYQIPRHRCLEDRLRAAQL
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Target  GAAAPNSEVVPLAEHKRARILDYARGRRPLILNFGSCSUPPFMRRLAAFRRLADQYADIADSLLVYIEEAHPSDGWASSDAPYQIPRHRCLEDRLRAAQL
        ggggcaagggccggcaagcacgtgcgccccacatgatttcctacccggtcccggctggaggtccgtagggcctggtgatggctcacccctcggcccggcc
        gccccagattctcaaagcgttaacggggctttatgggcgccttggtcctggtcaaacatcactttataacaccaggcgcaccaatcgaggtaagtgccat
        tcgttccggggccgcgggccgccgcccggccccccccgaggcggcggcccccccgcgccccggccccgggcggccggcgcgccgcgccccagcggcgagg
                                              *                                                             

Query   MNATVPGSLVVVDTMENAANAAYGAYFERLYIVKDEVVVYQGGRGPEGYRICELRSWLERYRSELDGSRAVVVHV
        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Target  MNATVPGSLVVVDTMENAANAAYGAYFERLYIVKDEVVVYQGGRGPEGYRICELRSWLERYRSELDGSRAVVVHV
        aagagcgacggggaagaggaggtggttgcctagagggggtcggagcggtcatgcaatcgatcagcggtcggggcg
        tacctcggttttactaaccaccagcatagtattaaatttaaggggcagagtgatgggtagaggatagcgctttat
        gccggcccggggcgggcggctgcccccgcccccacgggccgccgtcgccgacgggcgcggcccggcccacgcgcg
                                                                                   
 Sequence until next stop: 
TAG
 * 

 Distance CDS-SECIS: 515 ; UGA-SECIS: 923

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = CM008302.1:subseq_43210598,100776_ Strand = + Positions = 51313 - 51390
 Found by:  Infernal (score=27.29) Covels (score=28.37)
 Stem2 length = 10   Apical loop length = 16   Insertion in stem2 = 0, 1
 Free Energy = -18.09

         ..(((((((.......(((((((((((((((................))))))))).)))))).........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcC-cuuuuuggggcgggccagg-cCuGAUGuuu-uuucaugaccggc
         ((((((((((--(...{[[((({((((((((................))))))))}.)))]]}.....-.)))))))))))
 target  CUCUGGUGUU--GUAAUGAAGUUCGGUUUUUAAAAGGUUUUAAGCCAGAAAACCGCUACUGAUGUAUC-UUGACACUGGAG
                         ****           ^^^                         ****