Command line: [exonerate -m p2g --showtargetgff -q TXNRD2.x.fa -t TXNRD2.extraction.KV884700.1.fa] Hostname: [sitdoc] C4 Alignment: ------------ Query: TXNRD2 Protein # Thioredoxin reductase 2 (TXNRD2) # Zebrafish Target: KV884700.1:subseq(1009562,100000) Monopterus albus unplaced genomic scaffold scaffold12.1, whole genome shotgun sequence Model: protein2genome:local Raw score: 1155 Query range: 190 -> 486 Target range: 61213 -> 71906 191 : ValSerLeuGluCysAlaGlyPheLeuThrGlyIleGlyLeuAspThrSerValMetVal : 210 |||:!!|||||||||||||||||||||||||||:!!||||||||||||!!!||||||||| ValAlaLeuGluCysAlaGlyPheLeuThrGlyValGlyLeuAspThrThrValMetVal 61214 : GTGGCTCTGGAGTGTGCAGGTTTCCTCACAGGCGTCGGCTTGGACACCACAGTGATGGTT : 61271 211 : ArgSerIleAlaLeuArgGlyPheAspGln >>>> Target Intron 1 >>>> G : 221 |||||||||||||||||||||||||||||| 76 bp | ArgSerIleAlaLeuArgGlyPheAspGln++ ++G 61272 : CGCAGCATCGCCCTCCGGGGGTTTGATCAGgt.........................agC : 61380 222 : lnMetSerGlyLeuValThrAspTyrMetGluThrTyrGlyThrLysPheHisTrpLysC : 241 |||||:!!||||||||||||||||||||||||.!!||||||||||||||| |||:!!| lnMetAlaGlyLeuValThrAspTyrMetGluAlaTyrGlyThrLysPheAlaTrpGlnC 61381 : AAATGGCAGGTTTGGTGACGGACTACATGGAGGCTTATGGGACCAAGTTTGCATGGCAAT : 61440 242 : ysThrProLysSerValGluLysLeuProSerGlyHisLeuGlnValThrTrpMetAspL : 261 ||..!||||||!!!|||!!:|||||| !!|||||| !|||||||||||||||! :!! ysValProLysArgValAspLysLeuSerSerGlyAlaLeuGlnValThrTrpThrAsnT 61441 : GTGTCCCTAAGAGAGTGGACAAACTCTCATCAGGAGCCCTTCAGGTGACCTGGACCAACA : 61500 262 : euAsnThrLysGluGluHisGlnAspThrPheAsnSerValLeuTrpAlaVal{G} >> : 279 !.!.||| !...||||||.!.|||!:!!:!:!!||||||||||||||||||{|} hrGlnThrGlySerGluHisAspAspSerTyrAspSerValLeuTrpAlaVal{G}++ 61501 : CCCAGACAGGAAGCGAGCACGACGACAGCTACGACTCTGTGCTGTGGGCAGTT{G}gt.. : 61557 280 : >> Target Intron 2 >>>> {ly}ArgAlaProGluThrLysThrLeuAsnLeuG : 290 5981 bp {||}||||||||||||||||||.!!|||..!|||! ++{ly}ArgAlaProGluThrLysAlaLeuGlyLeuA 61558 : .......................ag{GT}AGAGCCCCTGAAACCAAAGCCCTGGGCCTCG : 67568 291 : luLysValGlyValLysIleAsnLysGluThrGlyLysIleIleValAlaAlaAspGluA : 310 !:|||:!!||||||:!!:!!|||||||||||||||||||||:!!|||!.!|||||||||: spLysLeuGlyValGlnLeuAsnLysGluThrGlyLysIleValValGlyAlaAspGluS 67569 : ACAAGCTCGGTGTGCAACTCAACAAGGAGACGGGGAAAATAGTTGTGGGCGCTGACGAAT : 67628 311 : laThrSerValProAsnIlePheAlaIleGlyAspIleGlyGlu >>>> Target In : 325 !!||||||||||||||||||!:!|||.!!||||||||||||||| 1259 erThrSerValProAsnIleTyrAlaPheGlyAspIleGlyGlu++ 67629 : CCACCTCCGTGCCAAACATCTATGCTTTTGGTGACATTGGCGAGgt.............. : 67675 326 : tron 3 >>>> GlyArgProGluLeuThrProThrAlaIleLysAlaGlyLysLeuLe : 340 bp ||||||||||||||||||||||||||||||||||||||||||||||| ++GlyArgProGluLeuThrProThrAlaIleLysAlaGlyLysLeuLe 67676 : ...........agGGTCGTCCTGAATTGACCCCAACAGCCATTAAAGCAGGAAAGCTTCT : 68977 341 : uAlaHisArgLeuAlaGlyArgSerThrGluLeuMetAsnTyr{G} >>>> Target : 355 ||||!.!|||||||||||| !!!!|||||||||:!!||| ! { } 54 uAlaArgArgLeuAlaGlyAlaArgThrGluLeuLeuAsnGln{C}++ 68978 : GGCCCGCAGACTGGCTGGGGCGAGAACAGAGCTCCTGAACCAA{T}gt............ : 69025 356 : Intron 4 >>>> {lu}AsnValAlaThrThrValPheThrProLeuGluTyrGlyCy : 369 2 bp { }...||| !|||||||||||||||||||||||||||||||| --{ys}GlnValProThrThrValPheThrProLeuGluTyrGlyCy 69026 : .............gt{gt}caggtgccCACCACAGTGTTCACCCCTCTTGAGTATGGCTG : 69606 370 : sValGlyLeuSerGluGluGluAlaGluArgArgHisGlyLysAspGlnIleGlu >>> : 388 ||||||||||||||||||||||||||||||||||||||||:!!||| |||||| sValGlyLeuSerGluGluGluAlaGluArgArgHisGlyGluAspGlyIleGlu++ 69607 : TGTAGGCCTAtctgaggaggaggcagagaggagacATGGAGAAGACGGCATAGAGgt... : 69665 389 : > Target Intron 5 >>>> ValTyrHisAlaPheTyrLysProLeuGluPheThr : 399 1387 bp |||||||||||||||||||||||||||||||||||| ++ValTyrHisAlaPheTyrLysProLeuGluPheThr 69666 : ......................aggTTTACCACGCTTTCTACAAGCCTCTGGAATTCACT : 71083 400 : ValAlaGluArgAspAlaThrGlnCysTyrIleLys >>>> Target Intron 6 > : 412 ||||||||| !!|||||| !||||||||||||||| 156 bp ValAlaGluCysAspAlaGlyGlnCysTyrIleLys++ 71084 : GTTGCTGAGTGTGATGCAGGCCAGTGTTACATAAAGgt...................... : 71124 413 : >>> ValValCysLeuArgGluGlyAspGlnArgValLeuGlyLeuHisPheThrGlyP : 430 ||||||||| !|||! |||:!!|||!:!:!!|||||||||||||||||||||| ++ValValCysGluArgGlyGlyAsnGlnLysIleLeuGlyLeuHisPheThrGlyP 71125 : ...agGTGGTATGTGAGCGAGGTGGAAACCAGAAGATCCTAGGTCTGCACTTCACAGGCC : 71332 431 : roAsnAlaGlyGluValThrGlnGlyPheAlaLeuGlyPhe{Gl} >>>> Target I : 444 ||||||||||||||||||||||||||||||||:!!||||||{!!} 404 roAsnAlaGlyGluValThrGlnGlyPheAlaMetGlyPhe{Hi}++ 71333 : CAAATGCAGGAGAAGTCACACAGGGCTTTGCTATGGGCTTC{CA}gt............. : 71378 445 : ntron 7 >>>> {n}CysGlyLeuThrTyrGluHisLeuArgAsnThrValGlyIleH : 459 bp {.}|||||| !||||||...|||||| !.!.||||||||||||| ++{s}CysGlyAlaThrTyrSerHisLeuLeuGlnThrValGlyIleH 71379 : ............ag{C}TGTGGAGCGACATATTCCCACCTGTTGCAGACAGTAGGCATCC : 71823 460 : isProThrCysAlaGluGluLeuThrLysLeuAsnIleThrLysArgSerGlyLeuAspA : 479 ||||||||||||||||||||:!!..!|||:!!|||||||||||||||||||||||||||| isProThrCysAlaGluGluValValLysValAsnIleThrLysArgSerGlyLeuAspA 71824 : ACCCAACCTGTGCTGAGGAGGTGGTCAAGGTGAACATTACGAAGCGCTCCGGTTTGGACG : 71883 480 : laThrValThrGlyCysUnkGly : 486 ||||||||||||||||| ||| laThrValThrGlyCys***Gly 71884 : CCACAGTCACCGGCTGCTGAGGT : 71906 vulgar: TXNRD2 190 486 . KV884700.1:subseq(1009562,100000) 61213 71906 + 1155 M 30 90 5 0 2 I 0 72 3 0 2 M 58 174 S 0 1 5 0 2 I 0 5977 3 0 2 S 1 2 M 45 135 5 0 2 I 0 1255 3 0 2 M 30 90 S 0 1 5 0 2 I 0 538 3 0 2 S 1 2 M 32 96 5 0 2 I 0 1383 3 0 2 M 24 72 5 0 2 I 0 152 3 0 2 M 32 96 S 0 2 5 0 2 I 0 400 3 0 2 S 1 1 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2017-11-24 ##type DNA # # # seqname source feature start end score strand frame attributes # KV884700.1:subseq(1009562,100000) exonerate:protein2genome:local gene 61214 71906 1155 + . gene_id 1 ; sequence TXNRD2 ; gene_orientation + KV884700.1:subseq(1009562,100000) exonerate:protein2genome:local cds 61214 61303 . + . KV884700.1:subseq(1009562,100000) exonerate:protein2genome:local exon 61214 61303 . + . insertions 0 ; deletions 0 KV884700.1:subseq(1009562,100000) exonerate:protein2genome:local splice5 61304 61305 . + . intron_id 1 ; splice_site "GT" KV884700.1:subseq(1009562,100000) exonerate:protein2genome:local intron 61304 61379 . + . intron_id 1 KV884700.1:subseq(1009562,100000) exonerate:protein2genome:local splice3 61378 61379 . + . intron_id 0 ; splice_site "AG" KV884700.1:subseq(1009562,100000) exonerate:protein2genome:local cds 61380 61554 . + . KV884700.1:subseq(1009562,100000) exonerate:protein2genome:local exon 61380 61554 . + . insertions 0 ; deletions 0 KV884700.1:subseq(1009562,100000) exonerate:protein2genome:local splice5 61555 61556 . + . intron_id 2 ; splice_site "GT" KV884700.1:subseq(1009562,100000) exonerate:protein2genome:local intron 61555 67535 . + . intron_id 2 KV884700.1:subseq(1009562,100000) exonerate:protein2genome:local splice3 67534 67535 . + . intron_id 1 ; splice_site "AG" KV884700.1:subseq(1009562,100000) exonerate:protein2genome:local cds 67536 67672 . + . KV884700.1:subseq(1009562,100000) exonerate:protein2genome:local exon 67536 67672 . + . insertions 0 ; deletions 0 KV884700.1:subseq(1009562,100000) exonerate:protein2genome:local splice5 67673 67674 . + . intron_id 3 ; splice_site "GT" KV884700.1:subseq(1009562,100000) exonerate:protein2genome:local intron 67673 68931 . + . intron_id 3 KV884700.1:subseq(1009562,100000) exonerate:protein2genome:local splice3 68930 68931 . + . intron_id 2 ; splice_site "AG" KV884700.1:subseq(1009562,100000) exonerate:protein2genome:local cds 68932 69022 . + . KV884700.1:subseq(1009562,100000) exonerate:protein2genome:local exon 68932 69022 . + . insertions 0 ; deletions 0 KV884700.1:subseq(1009562,100000) exonerate:protein2genome:local splice5 69023 69024 . + . intron_id 4 ; splice_site "GT" KV884700.1:subseq(1009562,100000) exonerate:protein2genome:local intron 69023 69564 . + . intron_id 4 KV884700.1:subseq(1009562,100000) exonerate:protein2genome:local splice3 69563 69564 . + . intron_id 3 ; splice_site "gt" KV884700.1:subseq(1009562,100000) exonerate:protein2genome:local cds 69565 69662 . + . KV884700.1:subseq(1009562,100000) exonerate:protein2genome:local exon 69565 69662 . + . insertions 0 ; deletions 0 KV884700.1:subseq(1009562,100000) exonerate:protein2genome:local splice5 69663 69664 . + . intron_id 5 ; splice_site "GT" KV884700.1:subseq(1009562,100000) exonerate:protein2genome:local intron 69663 71049 . + . intron_id 5 KV884700.1:subseq(1009562,100000) exonerate:protein2genome:local splice3 71048 71049 . + . intron_id 4 ; splice_site "ag" KV884700.1:subseq(1009562,100000) exonerate:protein2genome:local cds 71050 71121 . + . KV884700.1:subseq(1009562,100000) exonerate:protein2genome:local exon 71050 71121 . + . insertions 0 ; deletions 0 KV884700.1:subseq(1009562,100000) exonerate:protein2genome:local splice5 71122 71123 . + . intron_id 6 ; splice_site "GT" KV884700.1:subseq(1009562,100000) exonerate:protein2genome:local intron 71122 71277 . + . intron_id 6 KV884700.1:subseq(1009562,100000) exonerate:protein2genome:local splice3 71276 71277 . + . intron_id 5 ; splice_site "AG" KV884700.1:subseq(1009562,100000) exonerate:protein2genome:local cds 71278 71375 . + . KV884700.1:subseq(1009562,100000) exonerate:protein2genome:local exon 71278 71375 . + . insertions 0 ; deletions 0 KV884700.1:subseq(1009562,100000) exonerate:protein2genome:local splice5 71376 71377 . + . intron_id 7 ; splice_site "GT" KV884700.1:subseq(1009562,100000) exonerate:protein2genome:local intron 71376 71779 . + . intron_id 7 KV884700.1:subseq(1009562,100000) exonerate:protein2genome:local splice3 71778 71779 . + . intron_id 6 ; splice_site "AG" KV884700.1:subseq(1009562,100000) exonerate:protein2genome:local cds 71780 71906 . + . KV884700.1:subseq(1009562,100000) exonerate:protein2genome:local exon 71780 71906 . + . insertions 0 ; deletions 0 KV884700.1:subseq(1009562,100000) exonerate:protein2genome:local similarity 61214 71906 1155 + . alignment_id 1 ; Query TXNRD2 ; Align 61214 191 90 ; Align 61380 221 174 ; Align 67538 280 135 ; Align 68932 325 90 ; Align 69567 356 96 ; Align 71050 388 72 ; Align 71278 412 96 ; Align 71781 445 126 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: TXNRD2 Protein # Thioredoxin reductase 2 (TXNRD2) # Zebrafish Target: KV884700.1:subseq(1009562,100000) Monopterus albus unplaced genomic scaffold scaffold12.1, whole genome shotgun sequence Model: protein2genome:local Raw score: 775 Query range: 0 -> 185 Target range: 49668 -> 56173 1 : AspTyrAspLeuValValIleGlyGlyGlySerGlyGlyLeuAlaCysSerLysGlu{A} : 20 !!:||||||||||||||||||||||||||||||||||||||||||||||||||||||{|} GluTyrAspLeuValValIleGlyGlyGlySerGlyGlyLeuAlaCysSerLysGlu{A} 49669 : GAATATGACCTGGTGGTTATTGGTGGTGGTTCAGGAGGGCTTGCCTGTTCCAAAGAA{G} : 49726 21 : >>>> Target Intron 1 >>>> {la}AlaGlnLeuGlyGlnLysValAlaVal : 29 102 bp {||}||||||||||||||||||||||||||| ++ ++{la}AlaGlnLeuGlyGlnLysValAlaVal 49727 : gt.........................ag{ct}gcacagctggGACAGAAAGTTGCTGTT : 49855 30 : LeuAspTyrValGluProSerLeuLys{G} >>>> Target Intron 2 >>>> { : 39 |||||||||||||||||||||:!!:!!{|} 121 bp { LeuAspTyrValGluProSerValGln{G}++ ++{ 49856 : TTAGATTATGTGGAGCCATCTGTTCAA{G}gt.........................ag{ : 50007 40 : ly}ThrLysTrpGlyLeuGlyGlyThrCysValAsnValGlyCysIleProLysLysLeu : 58 ||}|||!:!||||||||||||||||||||||||||||||||||||||||||||||||||| ly}ThrArgTrpGlyLeuGlyGlyThrCysValAsnValGlyCysIleProLysLysLeu 50008 : GT}ACCAGATGGGGTCTTGGTGGTACATGTGTTAATGTGGGCTGTATTCCTAAGAAGCTC : 50063 59 : MetHisGlnAlaAlaLeuLeuGlyThrAlaValLysAspAlaArgLysTyrGlyTrpGln : 78 ||||||||||||||||||||||||||||||||||||||||||! !||||||||||||||| MetHisGlnAlaAlaLeuLeuGlyThrAlaValLysAspAlaThrLysTyrGlyTrpGln 50064 : ATGCATCAGGCAGCTCTACTTGGCACTGCTGTCAAAGATGCTACAAAGTACGGCTGGCAG : 50123 79 : IleProGluThrLeuSerHisAsp{Tr} >>>> Target Intron 3 >>>> {p} : 87 ||| !!! ! !!:!!! !||||||{||} 3608 bp {|} IleSerGlyProValTyrHisAsp{Tr}++ ++{p} 50124 : ATCTCAGGGCCGGTCTACCATGAC{TG}gt.........................ag{G} : 53760 88 : ProThrMetAlaGluAlaValGlnAsnHisValArgSerLeuAsnTrpGlyHisArgVal : 107 !!||||||||||||||||||||||||||||||!:!|||||||||||||||||||||||| AlaThrMetAlaGluAlaValGlnAsnHisValLysSerLeuAsnTrpGlyHisArgVal 53761 : GCCACCATGGCGGAGGCCGTTCAAAACCATGTCAAGTCCCTGAACTGGGGTCACAGAGTT : 53818 108 : GlnLeuGlnAsp{Ly} >>>> Target Intron 4 >>>> {s}LysValLysTyr : 116 ||||||||||||{||} 1425 bp {|}.!.||||||||| GlnLeuGlnAsp{Ly}++ ++{s}AsnValLysTyr 53819 : CAGCTCCAGGAC{AA}gt.........................ag{g}aACGTGAAGTAT : 55270 117 : LeuAsnMetLysGlyThrLeuLeuAspLysHisThrValArgAlaValAsnAlaGlnGly : 136 ||||||!!:||||||!:!|||:!!|||:!!|||||||||!:!!.!:!!!.. ! !||| LeuAsnIleLysGlySerLeuValAspGluHisThrValLysGlyLeuThrLysAlaGly 55271 : CTGAACATTAAGGGAAGTCTGGTGGATGAACACACTGTGAAAGGACTCACAAAAGCAGGA : 55330 137 : LysGlu >>>> Target Intron 5 >>>> MetThrValThrAlaArgAsnIleL : 147 |||||| 453 bp |||! !:!!||||||!:!||||||: LysGlu++ ++MetIleLeuThrAlaLysAsnIleV 55331 : AAAGAGgt.........................agATGATCCTGACTGCCAAGAACATTG : 55816 148 : euLeuAlaThrGlyGlyArgProLysTyrProThrHis >>>> Target Intron 6 : 160 !!:!!||||||||||||||||||||||||||||||:!! 241 bp alIleAlaThrGlyGlyArgProLysTyrProThrAsn++ 55817 : TGATTGCCACAGGTGGACGGCCCAAGTACCCCACAAATgt.................... : 55857 161 : >>>> ValProGlyAlaMetGluPheGlyIleThrSerAspAspIlePheTrpLeuLy : 177 :!!||||||||||||||| !|||:!!|||||||||||||||||||||||||| ++IleProGlyAlaMetGluHisGlyLeuThrSerAspAspIlePheTrpLeuLy 55858 : .....agATCCCTGGAGCCATGGAGCACGGCCTCACCAGCGATGACatattttggctgaa : 56147 178 : sGluSerProLysLysThrLeuIle : 185 |:::|||||| !||||||! !:!! sLysSerProGlyLysThrCysVal 56148 : aaagtcACCTGGAAAAACGTGTGTA : 56173 vulgar: TXNRD2 0 185 . KV884700.1:subseq(1009562,100000) 49668 56173 + 775 M 19 57 S 0 1 5 0 2 I 0 98 3 0 2 S 1 2 M 18 54 S 0 1 5 0 2 I 0 117 3 0 2 S 1 2 M 47 141 S 0 2 5 0 2 I 0 3604 3 0 2 S 1 1 M 24 72 S 0 2 5 0 2 I 0 1421 3 0 2 S 1 1 M 26 78 5 0 2 I 0 449 3 0 2 M 21 63 5 0 2 I 0 237 3 0 2 M 26 78 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2017-11-24 ##type DNA # # # seqname source feature start end score strand frame attributes # KV884700.1:subseq(1009562,100000) exonerate:protein2genome:local gene 49669 56173 775 + . gene_id 2 ; sequence TXNRD2 ; gene_orientation + KV884700.1:subseq(1009562,100000) exonerate:protein2genome:local cds 49669 49726 . + . KV884700.1:subseq(1009562,100000) exonerate:protein2genome:local exon 49669 49726 . + . insertions 0 ; deletions 0 KV884700.1:subseq(1009562,100000) exonerate:protein2genome:local splice5 49727 49728 . + . intron_id 1 ; splice_site "GT" KV884700.1:subseq(1009562,100000) exonerate:protein2genome:local intron 49727 49828 . + . intron_id 1 KV884700.1:subseq(1009562,100000) exonerate:protein2genome:local splice3 49827 49828 . + . intron_id 0 ; splice_site "ag" KV884700.1:subseq(1009562,100000) exonerate:protein2genome:local cds 49829 49885 . + . KV884700.1:subseq(1009562,100000) exonerate:protein2genome:local exon 49829 49885 . + . insertions 0 ; deletions 0 KV884700.1:subseq(1009562,100000) exonerate:protein2genome:local splice5 49886 49887 . + . intron_id 2 ; splice_site "GT" KV884700.1:subseq(1009562,100000) exonerate:protein2genome:local intron 49886 50006 . + . intron_id 2 KV884700.1:subseq(1009562,100000) exonerate:protein2genome:local splice3 50005 50006 . + . intron_id 1 ; splice_site "AG" KV884700.1:subseq(1009562,100000) exonerate:protein2genome:local cds 50007 50151 . + . KV884700.1:subseq(1009562,100000) exonerate:protein2genome:local exon 50007 50151 . + . insertions 0 ; deletions 0 KV884700.1:subseq(1009562,100000) exonerate:protein2genome:local splice5 50152 50153 . + . intron_id 3 ; splice_site "GT" KV884700.1:subseq(1009562,100000) exonerate:protein2genome:local intron 50152 53759 . + . intron_id 3 KV884700.1:subseq(1009562,100000) exonerate:protein2genome:local splice3 53758 53759 . + . intron_id 2 ; splice_site "AG" KV884700.1:subseq(1009562,100000) exonerate:protein2genome:local cds 53760 53834 . + . KV884700.1:subseq(1009562,100000) exonerate:protein2genome:local exon 53760 53834 . + . insertions 0 ; deletions 0 KV884700.1:subseq(1009562,100000) exonerate:protein2genome:local splice5 53835 53836 . + . intron_id 4 ; splice_site "GT" KV884700.1:subseq(1009562,100000) exonerate:protein2genome:local intron 53835 55259 . + . intron_id 4 KV884700.1:subseq(1009562,100000) exonerate:protein2genome:local splice3 55258 55259 . + . intron_id 3 ; splice_site "ag" KV884700.1:subseq(1009562,100000) exonerate:protein2genome:local cds 55260 55338 . + . KV884700.1:subseq(1009562,100000) exonerate:protein2genome:local exon 55260 55338 . + . insertions 0 ; deletions 0 KV884700.1:subseq(1009562,100000) exonerate:protein2genome:local splice5 55339 55340 . + . intron_id 5 ; splice_site "GT" KV884700.1:subseq(1009562,100000) exonerate:protein2genome:local intron 55339 55791 . + . intron_id 5 KV884700.1:subseq(1009562,100000) exonerate:protein2genome:local splice3 55790 55791 . + . intron_id 4 ; splice_site "AG" KV884700.1:subseq(1009562,100000) exonerate:protein2genome:local cds 55792 55854 . + . KV884700.1:subseq(1009562,100000) exonerate:protein2genome:local exon 55792 55854 . + . insertions 0 ; deletions 0 KV884700.1:subseq(1009562,100000) exonerate:protein2genome:local splice5 55855 55856 . + . intron_id 6 ; splice_site "GT" KV884700.1:subseq(1009562,100000) exonerate:protein2genome:local intron 55855 56095 . + . intron_id 6 KV884700.1:subseq(1009562,100000) exonerate:protein2genome:local splice3 56094 56095 . + . intron_id 5 ; splice_site "AG" KV884700.1:subseq(1009562,100000) exonerate:protein2genome:local cds 56096 56173 . + . KV884700.1:subseq(1009562,100000) exonerate:protein2genome:local exon 56096 56173 . + . insertions 0 ; deletions 0 KV884700.1:subseq(1009562,100000) exonerate:protein2genome:local similarity 49669 56173 775 + . alignment_id 2 ; Query TXNRD2 ; Align 49669 1 57 ; Align 49831 21 54 ; Align 50009 40 141 ; Align 53761 88 72 ; Align 55261 113 78 ; Align 55792 139 63 ; Align 56096 160 78 # --- END OF GFF DUMP --- # -- completed exonerate analysis