Command line: [exonerate --exhaustive yes -m p2g --showtargetgff -q treball/run/SELENOL/SELENOL.x.fa -t treball/run/SELENOL/SELENOL.extraction.KV884852.1.fa] Hostname: [sitdoc] C4 Alignment: ------------ Query: SELENOL # Protein # Selenoprotein L (SELENOL) # Zebrafish Target: KV884852.1:subseq(663225,100000) Monopterus albus unplaced genomic scaffold scaffold164.1, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 582 Query range: 21 -> 298 Target range: 79351 -> 48145 22 : ThrSerLeuGluTyrValGluLysAspThrAlaAsnGlyCysThr >>>> Target I : 37 |||..!|||:!!!:! !!!: !||| !|||!!.|||||| ! 2332 ThrAspLeuGlnPheSerAspProAspLeuAlaLysGlyCysGlu++ 79351 : ACAGATTTACAGTTCAGTGATCCAGACCTGGCAAAAGGCTGTGAGgt............. : 79304 38 : ntron 1 >>>> LeuGlnGluValAsnGlyLysValLeuProLeuLeuGlyLeuMetS : 52 1 bp !.!. ||| !|||:!! ! !!||||||||||||!!:! -+GluAsnPheValProHisLysIleThrThrLeuLeuGlyLeuIleT 79303 : ............tgGAGAATTTTGTCCCACATAAGATCACTACTTTATTGGGCTTAATCA : 55940 53 : erAlaGlyAlaLysPheCysAsn{Se} >>>> Target Intron 2 >>>> {r}L : 61 !!||||||||| ! !!.! !!!.{||} 120 bp {|}| hrAlaGlyAlaHisLeuTyrLys{Se}++ ++{r}L 55939 : CAGCTGGAGCACACTTGTACAAA{AG}gt.........................ag{T}C : 55793 62 : euGlyValLysAsnGlnLysGluAlaGluSerLeuTrpGluArgPhePhe{Gl} >>>> : 78 |||||||||||...:::...|||||||||:!!:!!|||:!!!:!! !!:!{!!} euGlyValLysLysLysSerGluAlaGluAlaIleTrpGlnLysCysTyr{Hi}++ 55792 : TTGgagtgaagaagaagagtgaAGCAGAGGCCATTTGGCAAAAGTGTTAT{CA}gt.... : 55738 79 : Target Intron 3 >>>> {n}AsnThrGluValArgGluSerValGluGlyLeuL : 90 630 bp {.}...... |||||||||..!:!!|||! !|||| ++{s}LysAlaAlaValArgGluGlnLeuGluValLeuL 55737 : .....................ag{c}aaagcagcagtgagaGAGCAGCTGGAGGTGCTTC : 55076 91 : euGlnLeuGlu >>>> Target Intron 4 >>>> ValGluTrpAspArgPheLe : 100 ||||||||||| 576 bp ||||||||| !||||| euGlnLeuGlu++ ++SerGluTrpAspSerPheLe 55075 : TGCAGCTGGaggt.........................agagcGAGTGGGACTCCTTCCT : 54470 101 : uLysArgLeuAspValGlnMetGlnMetSerAspThrValLeuSerGlnHisProAlaAl : 120 |:!!!!!:!!||| ! :!!:!!! !!!|||! ! !|||||| ! !.!!|| uGluSerValAspArgGlyLeuLysThrThrAspArgGlnLeuSerGlyAlaLysThrAl 54469 : GGAGAGTGTGGACAGAGGTCTGAAGACAACAGATAGACAGTTGTCAGGAGCAAAGACGGC : 54410 121 : aGlnThrLeuSerSerAspMetArgPheLeuHisValGlnThrLys{Gl} >>>> Tar : 136 |.!.!:!|||||| !!|||! !||| ! !!! !!:!!:! !{||} aAspSerLeuSerProAspThrSerPheThrAspGlyArgSerGly{Gl}++ 54409 : AGACAGCCTGAGCCCTGATACTTCATTTACTGACGGACGGAGTGGA{GA}gt........ : 54358 137 : get Intron 5 >>>> {u}AsnValSerLeuGlyGlnTyrLeuGlyLysGlyGluAs : 149 89 bp {|} !|||!!!||||||!!.|||||||||:!!|||..!!! ++{u}CysValThrLeuGlyHisTyrLeuGlyGlnGlyArgLy 54357 : .................ag{G}TGTGTAACTCTGGGTCACTACCTGGGTCAGGGTCGGAA : 54234 150 : nLeuLeuLeuValLeuLeuArgHisPheGlyUnkLeuProUnkArgAspHisLeuThrGl : 169 .|||||||||||||||:!!|||||||||||| ||| !! |||||||||:!!.!!|| sLeuLeuLeuValLeuIleArgHisPheGly***LeuSer***ArgAspHisValAlaGl 54233 : GCTGTTACTGGTTCTCATCAGACATTTTGGATGACTGTCGTGACGAGACCATGTGGCCGA : 54174 170 : uLeuLysAsnSerLys >>>> Target Intron 6 >>>> MetLeuLeuGluAla : 179 ||||:!! !|||:!! 4150 bp !||||||||| uLeuGlnAlaSerGln++ ++AlaAlaLeuGluAla 54173 : ACTGCAGGCCAGCCAGgt.........................agGCAGCCCTGGAGGCT : 49994 180 : GlnSerLeuArgValLeuValValSerTyrGlySerLeuGluGlyAlaThrPheTrpLeu : 199 ||||||:!! !!|||||||||||||||!:!|||!!!:!!||||||||| !.!.|||||| GlnSerValTrpValLeuValValSerPheGlyCysMetGluGlyAlaGlnLeuTrpLeu 49993 : CAGTCAGTGTGGGTCTTGGTGGTTTCTTTTGGCTGCATGGAGGGAGCTCAGCTGTGGCTG : 49934 200 : GluGlnThrGlyPheGluPheAspMetLeuLeuAspThrGluArgThr >>>> Targe : 216 ||||||||||||! !...|||||||||||||||||| !!:!!|||! ! GluGlnThrGlyCysSerPheAspMetLeuLeuAspProGlnArgLys++ 49933 : GAGCAGACCGGATGTAGCTTTGACATGCTGCTGGATCCACAGAGGAAGgt.......... : 49881 217 : t Intron 7 >>>> ValTyrLysMetPheGlyLeuGlySerSerMetSerLysValM : 230 597 bp :!!|||!:!! ||||||||| !!|||||| :!!||||||| ++IleTyrArgSerPheGlyLeuCysSerSerTyrAlaLysValM 49880 : ...............agATCTACAGGAGTTTTGGCCTGTGCTCGTCCTACGCCAAGGTGA : 49244 231 : etLysPheLysLeuMetPheHisTyrSerGluIleMetAlaMetAsnArgThrLeuProG : 250 |||||||| ! !:!!.!.!.!||||||||| ! |||:!!..!||| !!!!|||! etLysPheGlyCysLeuLeuArgTyrSerGluTyrGluAlaValGlyArgAspPheProA 49243 : TGAAGTTCGGCTGCCTGCTGCGTTACTCAGAGTACGAAGCAGTGGGCCGAGACTTCCCTG : 49184 251 : luMetProProGlnPheIleGluAspLeuPheGln >>>> Target Intron 8 >> : 262 !:!!:||||||!::.!.:!:||||||:!!!:!||| 892 bp spIleProProArgLeuLeuGluAspIleTyrGln++ 49183 : ACATCCCCCCTCGCCTACTGGAAGACATCTATCAGgt....................... : 49146 263 : >> MetGlyGlyAspPheValLeuGluGlnAspGlyLysValIlePheSerTyrArgCy : 280 |||||||||||||||:!!|||!!::!!! |||||||||:!!.!!!!!:!! !! ++MetGlyGlyAspPheLeuLeuAspGluAlaGlyLysValLeuLeuCysHisSerSe 49145 : ..agATGGGCGGTGACTTTCTGTTGGATGAAGCAGGAAAGGTGCTTCTTTGCCACTCTTC : 48202 281 : sLysSerProValAspArgProSerAlaThrGlnIleLeuAlaThrValSerAla : 298 !|||!!!|||:!!|||||||||!!!|||!:!.!.|||||| !.!!|||..!||| rLysThrProLeuAspArgProThrAlaSerAspIleLeuGlnAlaValAspAla 48201 : TAAAACCCCTCTGGACAGGCCAACTGCGAGCGACATCCTGCAGGCTGTGGACGCT : 48146 vulgar: SELENOL 21 298 . KV884852.1:subseq(663225,100000) 79351 48145 - 582 M 15 45 5 0 2 I 0 23317 3 0 2 M 23 69 S 0 2 5 0 2 I 0 116 3 0 2 S 1 1 M 17 51 S 0 2 5 0 2 I 0 626 3 0 2 S 1 1 M 15 45 5 0 2 I 0 572 3 0 2 M 42 126 S 0 2 5 0 2 I 0 85 3 0 2 S 1 1 M 38 114 5 0 2 I 0 4146 3 0 2 M 41 123 5 0 2 I 0 593 3 0 2 M 46 138 5 0 2 I 0 888 3 0 2 M 37 111 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2017-12-01 ##type DNA # # # seqname source feature start end score strand frame attributes # KV884852.1:subseq(663225,100000) exonerate:protein2genome:local gene 48146 79351 582 - . gene_id 1 ; sequence SELENOL ; gene_orientation + KV884852.1:subseq(663225,100000) exonerate:protein2genome:local cds 79307 79351 . - . KV884852.1:subseq(663225,100000) exonerate:protein2genome:local exon 79307 79351 . - . insertions 0 ; deletions 0 KV884852.1:subseq(663225,100000) exonerate:protein2genome:local splice5 79305 79306 . - . intron_id 1 ; splice_site "GT" KV884852.1:subseq(663225,100000) exonerate:protein2genome:local intron 55986 79306 . - . intron_id 1 KV884852.1:subseq(663225,100000) exonerate:protein2genome:local splice3 55986 55987 . - . intron_id 0 ; splice_site "TG" KV884852.1:subseq(663225,100000) exonerate:protein2genome:local cds 55915 55985 . - . KV884852.1:subseq(663225,100000) exonerate:protein2genome:local exon 55915 55985 . - . insertions 0 ; deletions 0 KV884852.1:subseq(663225,100000) exonerate:protein2genome:local splice5 55913 55914 . - . intron_id 2 ; splice_site "GT" KV884852.1:subseq(663225,100000) exonerate:protein2genome:local intron 55795 55914 . - . intron_id 2 KV884852.1:subseq(663225,100000) exonerate:protein2genome:local splice3 55795 55796 . - . intron_id 1 ; splice_site "AG" KV884852.1:subseq(663225,100000) exonerate:protein2genome:local cds 55741 55794 . - . KV884852.1:subseq(663225,100000) exonerate:protein2genome:local exon 55741 55794 . - . insertions 0 ; deletions 0 KV884852.1:subseq(663225,100000) exonerate:protein2genome:local splice5 55739 55740 . - . intron_id 3 ; splice_site "GT" KV884852.1:subseq(663225,100000) exonerate:protein2genome:local intron 55111 55740 . - . intron_id 3 KV884852.1:subseq(663225,100000) exonerate:protein2genome:local splice3 55111 55112 . - . intron_id 2 ; splice_site "ag" KV884852.1:subseq(663225,100000) exonerate:protein2genome:local cds 55065 55110 . - . KV884852.1:subseq(663225,100000) exonerate:protein2genome:local exon 55065 55110 . - . insertions 0 ; deletions 0 KV884852.1:subseq(663225,100000) exonerate:protein2genome:local splice5 55063 55064 . - . intron_id 4 ; splice_site "gt" KV884852.1:subseq(663225,100000) exonerate:protein2genome:local intron 54489 55064 . - . intron_id 4 KV884852.1:subseq(663225,100000) exonerate:protein2genome:local splice3 54489 54490 . - . intron_id 3 ; splice_site "ag" KV884852.1:subseq(663225,100000) exonerate:protein2genome:local cds 54361 54488 . - . KV884852.1:subseq(663225,100000) exonerate:protein2genome:local exon 54361 54488 . - . insertions 0 ; deletions 0 KV884852.1:subseq(663225,100000) exonerate:protein2genome:local splice5 54359 54360 . - . intron_id 5 ; splice_site "GT" KV884852.1:subseq(663225,100000) exonerate:protein2genome:local intron 54272 54360 . - . intron_id 5 KV884852.1:subseq(663225,100000) exonerate:protein2genome:local splice3 54272 54273 . - . intron_id 4 ; splice_site "AG" KV884852.1:subseq(663225,100000) exonerate:protein2genome:local cds 54157 54271 . - . KV884852.1:subseq(663225,100000) exonerate:protein2genome:local exon 54157 54271 . - . insertions 0 ; deletions 0 KV884852.1:subseq(663225,100000) exonerate:protein2genome:local splice5 54155 54156 . - . intron_id 6 ; splice_site "GT" KV884852.1:subseq(663225,100000) exonerate:protein2genome:local intron 50007 54156 . - . intron_id 6 KV884852.1:subseq(663225,100000) exonerate:protein2genome:local splice3 50007 50008 . - . intron_id 5 ; splice_site "AG" KV884852.1:subseq(663225,100000) exonerate:protein2genome:local cds 49884 50006 . - . KV884852.1:subseq(663225,100000) exonerate:protein2genome:local exon 49884 50006 . - . insertions 0 ; deletions 0 KV884852.1:subseq(663225,100000) exonerate:protein2genome:local splice5 49882 49883 . - . intron_id 7 ; splice_site "GT" KV884852.1:subseq(663225,100000) exonerate:protein2genome:local intron 49287 49883 . - . intron_id 7 KV884852.1:subseq(663225,100000) exonerate:protein2genome:local splice3 49287 49288 . - . intron_id 6 ; splice_site "AG" KV884852.1:subseq(663225,100000) exonerate:protein2genome:local cds 49149 49286 . - . KV884852.1:subseq(663225,100000) exonerate:protein2genome:local exon 49149 49286 . - . insertions 0 ; deletions 0 KV884852.1:subseq(663225,100000) exonerate:protein2genome:local splice5 49147 49148 . - . intron_id 8 ; splice_site "GT" KV884852.1:subseq(663225,100000) exonerate:protein2genome:local intron 48257 49148 . - . intron_id 8 KV884852.1:subseq(663225,100000) exonerate:protein2genome:local splice3 48257 48258 . - . intron_id 7 ; splice_site "AG" KV884852.1:subseq(663225,100000) exonerate:protein2genome:local cds 48146 48256 . - . KV884852.1:subseq(663225,100000) exonerate:protein2genome:local exon 48146 48256 . - . insertions 0 ; deletions 0 KV884852.1:subseq(663225,100000) exonerate:protein2genome:local similarity 48146 79351 582 - . alignment_id 1 ; Query SELENOL ; Align 79352 22 45 ; Align 55986 37 69 ; Align 55794 61 51 ; Align 55110 79 45 ; Align 54489 94 126 ; Align 54271 137 114 ; Align 50007 175 123 ; Align 49287 216 138 ; Align 48257 262 111 # --- END OF GFF DUMP --- # -- completed exonerate analysis