_______________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 5e-56
 Query name: gi|194272328|gb|ABO38818.2| phospholipid hydroperoxide glutathione peroxidase [Thunnus maccoyii]
 Query range: 1-186  (total 186)

 Target: /data/www-rg/seblastian_results/309329612/tempfiles/temptarget.fasta
 Chromosome: KV884810.1:subseq_1119524,100000_ Strand: +
 Positions:
 -Exon 1  49028        49078
 -Exon 2  49539        49633
 -Exon 3  49737        49881
 -Exon 4  50000        50151
 -Exon 5  50345        50369
 -Exon 6  50647        50706
 -Exon 7  51219        51248

 Redox box: no

Query   MRLIGSAVLFSVLLQAM <---Intron---> SAPTEDWQTATSIYDFSATDIDGNLVSLEKYR <---Intron---> GNVVIITNVASKUGKTPVN
        | || | |||| ||||| <   460bp    > |  ||||| |||||||||||||||/||||||| <   103bp    > |||||||||||||||||||
Target  MNLIQSTVLFSFLLQAM                SGLTEDWQRATSIYDFSATDIDGNVVSLEKYR                GNVVIITNVASKUGKTPVN
        aacactagctttcccga                tgcaggtcagatatgttgagaggaggtcgata                gaggaaaaggtatgaacga
        tattacctttctttact                cgtcaagagccctaatcccatagattctaaag                gattttcatccaggaccta
        gcgagctctctcgggag                tcgagtgggcatttccagatctctgtcggac                ggttctccttccaatacagt
                                                                                                     *      

Query   YSQFTQMHAKYAERGLHILAFPSNQFGNQ <---Intron---> EPGNETQIKQFAQSYNAQFDMFSKIDVNGANAHPLWKWMKEQPNGKGFMGN <--
        |||| /||| |||| | |||||||||||| <   118bp    > ||||||||||||/|||||||/|||||||| ||||||||/||||||/||/|| <  
Target  YSQFAEMHAMYAERNLSILAFPSNQFGNQ                EPGNETQIKQFAESYNAQFDLFSKIDVNGDNAHPLWKWLKEQPNGRGFLGN    
        ttctggacgatggaataacgtctactgac                gcgagacaactggttagctgctaaaggaggagccctatcagccagagtcga    
        acatcatactacagatgttctccaatgaa                acgaacataatcacaacatattgatatagaacactgagtaaacagggttga    
        ctgtaagccgttgatgcccccttcgtgtg                gaccatgcggttgactcgtcgctactgcgcttctggggggggctggccga     
                                                                                                            

Query   -Intron---> SIKWNFTK <---Intron---> FLINKEGQVVKRYGPLDDPS <---Intron---> VVEKDLPQYL
         193bp    > |||||||| <   277bp    > ||||/||||||||||||||| <   512bp    > ||||||||||
Target              SIKWNFTK                FLINREGQVVKRYGPLDDPS                VVEKDLPQYL
                    aaatataa                ttaaaggcggaatgccggca                gggagccctc
                    gtagatca                tttagagattagagctaacg                ttaaatcaat
                   ttcggtctg                tgctaggggggatacgttat                gggatttact
                                                                                          
 Sequence until next stop: 
TAA
 * 

 Distance CDS-SECIS: 109 ; UGA-SECIS: 481

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = KV884810.1:subseq_1119524,100000_ Strand = + Positions = 51358 - 51434
 Found by:  Infernal (score=27.23) Covels (score=21.03)
 Stem2 length = 8   Apical loop length = 20   Insertion in stem2 = 0, 0
 Free Energy = -12.25

         ..(((((((.......(((((((((((((((................)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcC-cuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         .({((({(((......{[[{((((({(((....................)))})))))}]]}..--...)))})))}).
 target  GUCCACCCCAGACCAGUGACGGUCUAUUUGUAAACCUGCAUAGCGGACAAAGCAGACCUGAUAA--AAAUGGCGUGCAA
                         ****           ^^^                        ****