Command line: [exonerate --exhaustive yes -m p2g --showtargetgff -q treball/run/DIO3b/DIO3b.x.fa -t treball/run/DIO3b/DIO3b.extraction.KV884701.1.fa]
Hostname: [sitdoc]

C4 Alignment:
------------
         Query: DIO3b # Protein # Iodothyronine deiodinase 3b (DIO3b) # Zebrafish
        Target: KV884701.1:subseq(3433220,100000) Monopterus albus unplaced genomic scaffold scaffold13.1, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 846
   Query range: 0 -> 253
  Target range: 49999 -> 50740

     1 : ArgAlaLeuLysAsnAlaLeuValCysLeuLeuIleLeuProArgPheLeuValAlaAla :    20
         !:!|||:!!|||||||||:!!|||||||||:!!:!:||||||||||||||||||!.!|||
         LysAlaIleLysAsnAlaValValCysLeuValLeuLeuProArgPheLeuValValAla
 50000 : AAAGCTATTAAAAATGCAGTAGTCTGCCTGGTCCTGCTGCCCCGTTTTCTGGTGGTAGCA : 50057

    21 : PheMetLeuTrpCysLeuAspPheLeuCysValArgLysArgValLeuValHisLeuGln :    40
          !!!!:||||||   |||||||||||||||:!!||||||||||||!!!:!!         
         ValIleLeuTrpLeuLeuAspPheLeuCysIleArgLysArgValPheLeu---------
 50058 : GTCATATTGTGGCTACTTGACTTTTTATGCATAAGGAAAAGGGTTTTCCTA--------- : 50111

    41 : GluArgAlaGluGluGluGluGluAspAlaGluGluGluGluGluProLeuCysIleSer :    60
            |||  !:!!! !:!!|||!  ||||||   !!:   ...      ||||||||||||
         ---ArgMetLysAlaGlnGluGlyAspAlaIleAspProSer------LeuCysIleSer
 50112 : ---AGGATGAAGGCGCAGGAGGGCGATGCCATCGATCCTTCC------CTCTGCATATCG : 50159

    61 : AspSerSerArgMetPheSerTrpGluSerLeuLysAlaValPheHisGlyHisLysLeu :    80
         ||||||!:!|||:!:||||||  !||||||||||||||||||!::|||||||||||||||
         AspSerAsnArgLeuPheSerLeuGluSerLeuLysAlaValTrpHisGlyHisLysLeu
 50160 : GACTCCAATCGTCTCTTCAGCCTGGAGTCCCTCAAAGCTGTGTGGCACGGCCATAAACTG : 50219

    81 : AspTyrMetLysSerAlaArgLeuGlyHisAlaAlaProAspSerGluValPheProLeu :   100
         |||!:!:!:|||:!!|||!.!|||||||||  !||||||:!!!!!|||||| !!! !|||
         AspPheLeuLysAlaAlaHisLeuGlyHisArgAlaProAsnThrGluValValGlnLeu
 50220 : GACTTTCTTAAAGCAGCGCATCTCGGACACAGAGCGCCCAACACCGAAGTTGTTCAGCTG : 50279

   101 : AlaGluProArgArgGlyArgValLeuGluPheAlaArgGlyHisArgProLeuValLeu :   120
         ! !!!:  !||||||.!!|||:!!|||!!:!:!|||!:!! ! ! |||||||||:!!|||
         GluAspLysArgArgSerArgIleLeuAspTyrAlaLysAspLysArgProLeuIleLeu
 50280 : GAGGATAAAAGGCGCAGCCGTATCCTTGATTACGCAAAGGACAAGAGACCGCTTATCCTC : 50339

   121 : SerPheGlySerCysSerUnkProProPheMetArgArgLeuLysAlaPheArgArgLeu :   140
         !:!||||||||||||!!!   ||||||||||||  !|||||||||||||||!:! !!:!!
         AsnPheGlySerCysThr***ProProPheMetAlaArgLeuLysAlaPheGlnGlyVal
 50340 : AACTTTGGCAGCTGCACCTGACCACCGTTCATGGCTCGTCTCAAGGCTTTCCAGGGAGTT : 50399

   141 : ValLeuArgTyrAlaAspValAlaAspAlaLeuLeuIleTyrIleGluGluAlaHisPro :   160
         |||! !!:! !!||||||:!!||||||:!!:!!:!!:!:|||||||||||||||||||||
         ValGlnGlnAsnAlaAspIleAlaAspSerValValValTyrIleGluGluAlaHisPro
 50400 : GTGCAGCAGAATGCAGACATCGCAGACTCTGTAGTAGTGTACATCGAGGAAGCGCACCCT : 50459

   161 : SerAspGlyTrpArgSerSerAspAlaProHisGlnIleArgArgHisArgSerLeuGlu :   180
         ||||||||||||! !|||!!!|||||||||:!!||||||! !!:!||||||!!!||||||
         SerAspGlyTrpMetSerThrAspAlaProTyrGlnIleProLysHisArgCysLeuGlu
 50460 : TCCGACGGCTGGATGAGCACTGACGCGCCATATCAAATCCCCAAACACCGGTGTCTGGAG : 50519

   181 : GluArgLeuSerAlaAlaArgLeuMetGluArgGluAlaProGlyCysAlaValValAla :   200
         !!:||||||!:!||||||!:!||||||.!.! !|||!.!|||||||||  !|||||||||
         AspArgLeuAsnAlaAlaGlnLeuMetHisLeuGluValProGlyCysLeuValValAla
 50520 : GACAGGCTGAACGCTGCGCAGCTGATGCACCTGGAGGTACCCGGCTGCCTGGTCGTGGCG : 50579

   201 : AspGlyMetGluAsnAlaAlaAsnSerAlaTyrGlyAlaTyrPheAspArgLeuTyrIle :   220
         |||.!!|||||||||:!!:!!|||:!!|||||||||||||||||||||||||||||||||
         AspSerMetGluAsnSerSerAsnAlaAlaTyrGlyAlaTyrPheAspArgLeuTyrIle
 50580 : GACAGCATGGAAAACTCCTCCAACGCTGCGTACGGAGCTTATTTCGACAGGCTTTATATA : 50639

   221 : ValGlnAspGlyArgValValTyrGlnGlyGlyArgGlyProGluGlyPheArgIleSer :   240
         :!!|||||||||!:!:!!||||||||||||||||||||||||||||||!:!|||||||||
         LeuGlnAspGlyLysIleValTyrGlnGlyGlyArgGlyProGluGlyTyrArgIleSer
 50640 : CTGCAGGATGGAAAGATAGTTTACCAGGGTGGCAGAGGACCTGAGGGGTATCGGATCTCA : 50699

   241 : GluLeuArgHisTrpLeuAspArgTyrArgGluArgLeu :   253
         ||||||||| !!|||||||||!:!||||||:!!||||||
         GluLeuArgAspTrpLeuAspGlnTyrArgGlnArgLeu
 50700 : GAGCTTAGAGACTGGCTGGATCAATACAGACAAAGGCTG : 50740

vulgar: DIO3b 0 253 . KV884701.1:subseq(3433220,100000) 49999 50740 + 846 M 37 111 G 4 0 M 13 39 G 2 0 M 197 591
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2017-12-01
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
KV884701.1:subseq(3433220,100000)	exonerate:protein2genome:local	gene	50000	50740	846	+	.	gene_id 1 ; sequence DIO3b ; gene_orientation .
KV884701.1:subseq(3433220,100000)	exonerate:protein2genome:local	cds	50000	50740	.	+	.	
KV884701.1:subseq(3433220,100000)	exonerate:protein2genome:local	exon	50000	50740	.	+	.	insertions 0 ; deletions 6
KV884701.1:subseq(3433220,100000)	exonerate:protein2genome:local	similarity	50000	50740	846	+	.	alignment_id 1 ; Query DIO3b ; Align 50000 1 111 ; Align 50111 42 39 ; Align 50150 57 591
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis