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_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:QUE_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
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 Blastx evalue: 5e-22
 Query name: gi|1004693737|ref|XP_007442441.2| PREDICTED: selenoprotein T [Python bivittatus]
 Query range: 1-195  (total 195)

 Target: /data/www-rg/seblastian_results/190233777/tempfiles/temptarget.fasta
 Chromosome: CEMB01025449.1 Strand: +
 Positions:
 -Exon 1  95551        95687
 -Exon 2  100011       100121
 -Exon 3  102021       102147
 -Exon 4  103828       103915
 -Exon 5  104470       104591

 Redox box: YES

Query   MKPTLALLLLVAVGLSGAGAQPGGLPPGKKLRMAYATGPLLKFQIC <---Intron---> VSUGYRRVFEEYMRVISQRYPDIRIEGENYLPQPIYR 
        ||| ||||||/ ||  |  ||||||||||||||||||||||||||| <   4323bp   > ||||||||||||||||||||||||||||||||||||| 
Target  MKPALALLLLLTVGFGGTSAQPGGLPPGKKLRMAYATGPLLKFQIC                VSUGYRRVFEEYMRVISQRYPDIRIEGENYLPQPIYR 
        aacgcgctcccaggtggatgccggcccgaaccagtgagcccatcat                gttgtccgtggtacgaacctcgacagggatccccata 
        tacctctttttctgtggcccacggtccgaatgtcaccgcttatatg                tcggaggttaaatgttgagacatgtagaaatcactag 
        gggcggcggggggcccgtaggtcagggggggcgcccgggccgcgt                ttcaatgggtggcggttcggcaccctagattctatat  
                                                                        *                                   

Query   <---Intron---> HIASFLSVFKLVLIGFIIVGKDPFAFFGMQAPSIWQWGQENK <---Intron---> VYACMMVFFLSNMIENQCMSTGAFEIT
        <   1899bp   > ||||||||||||||||||||||||| |||||||||||||||| <   1680bp   > |||||||||||||||||||||||||||
Target                 HIASFLSVFKLVLIGFIIVGKDPFALFGMQAPSIWQWGQENK                VYACMMVFFLSNMIENQCMSTGAFEIT
                       cagttctgtacgcagtaaggagctgttgacgcaatctgcgaa                gtgtaagttcaaaagactataggtgaa
                       atccttcttattttgttttgaactcttgtaccgtgaggaaaa                tacgttttttgattaaagtccgctatc
                      ataatcgaccaagaaccttccgttttgtagataccgggtaatg                ctttggtccgtcgtgcacgaatataat
                                                                                                            

Query   LND <---Intron---> VPVWSKLESGHLPSMQQLVQILDNEMKLNVHMEQMPHHRS
        ||| <   554bp    > ||||||||||||||||||||||||||||||||||||||||
Target  LND                VPVWSKLESGHLPSMQQLVQILDNEMKLNVHMEQMPHHRS
        tag                gcgttacgtgccctacccgcacgagaacagcagcacccat
        ta                atctgcatacgatcctaattattaaatatatataatcaagc
        at                ttgggtggatgtttcgagttactttagactgcggagcttaa
                                                                   
 Sequence until next stop: 
TAG
 * 

 Distance CDS-SECIS: 731 ; UGA-SECIS: 1169

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = CEMB01025449.1 Strand = + Positions = 105323 - 105397
 Found by:  Infernal (score=29.4) Covels (score=37.24)
 Stem2 length = 11   Apical loop length = 13   Insertion in stem2 = 0, 0
 Free Energy = -11.22

         ..(((((((.......(((((((((((((((...............))))))))))))))).........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuu-uuucaugaccggc
         ..(({((((.--....{[[[(({(((((((((.............)))))))))}))]]]}.....-.-.))))}))..
 target  AUGAACGAAA--UAAAUGAAGGCCUGUACUGAAGACAGCGUGCUGUUGGUACAGACUGGAUGCUCU-U-CUUCGCUUUC
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