_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:2     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 2e-29
 Query name: gi|961009001|ref|XP_014820571.1| PREDICTED: selenoprotein P [Calidris pugnax]
 Query range: 1-395  (total 396)

 Target: /data/www-rg/seblastian_results/227586083/tempfiles/temptarget.fasta
 Chromosome: CEMB01031586.1 Strand: +
 Positions:
 -Exon 1  100000       100202
 -Exon 2  102062       102274
 -Exon 3  103511       103622
 -Exon 4  104163       104660

 Redox box: YES

Query   MWAGLGLVLALCLLPGGGAETQ----NCKEPPEWHIGEENPMLNSRGSVTVVALLQASUYLCLLQASR <---Intron---> LEDLRVKLENEGLVNI
        || |||| |||||||||| |/|     |||||/| |||/||||//||||||||||||||||||||||| <   1859bp   > |||||/|||//|  ||
Target  MWVGLGLALALCLLPGGGTESQGSSSRCKEPPDWQIGEQNPMLDARGSVTVVALLQASUYLCLLQASR                LEDLRLKLESDGFTNI
        atggcgcgcgctcccgggagacgtatctagccgtcaggcacacggagtgagggcccgattttctcgtc                cggcccacgaggtaaa
        tgtgtgtctctgttcgggcagagcgcggaaccagatgaaacttacggctcttcttacggatgttaccg                taatgtatagagtcat
        ggtgggtcgtctccaaagagcgcaccttagggcgacaggcaggccattggggctcaacacgcgggtt                agatgaggggttgtctc
                                                                  *                                         

Query   SYVVVNHQGAHSQRKFHLLKESVSDYITVYQQDEQQPDVWTTLNGSKDDFLIYDR <---Intron---> CGRLVYHLGLPYSFLSFQYVEESIKVAYC
        |//|||||| ||/ |/|||/| ||//| ||||| |||||| ||||/||||||||| <   1236bp   > ||||||||||||||||| ||||/| / ||
Target  SFIVVNHQGYHSRLKYHLLREKVSEHIPVYQQDMQQPDVWKTLNGNKDDFLIYDR                CGRLVYHLGLPYSFLSFPYVEEAIHITYC
        ttaggaccgtctccatcccagagtgcacgtccgacccggtaacagaaggtcatga                tgccgtccgtctttcatctggggacaatt
        cttttaaagaacgtaaattgaatcaatctaaaataacatgactagaaaatttaag                gggttaatgtcacttgtcataactatcag
        cttgcttaactcgggtttaagatagctcacagtgagtccgatgtatatttgccc                gtcttgtctcgtcttgttatgaactctact
                                                                                                            

Query   ESKCGNCS <---Intron---> YTEPDIDGVCENITKSVDEKLAEIEPKPSGHHSHHHRGHGHGHGQGHRHRHHHHRGGSRHSKNEDHQASSESHRHH
        |||||||/ <   540bp    >                                                          |/ /  |  /|       |
Target  ESKCGNCT                ---------------------------------------------------------SKKTDEEAAEAVPPPSPQH
        gtatgata                ---------------------------------------------------------taaaggggggggccctccc
        acaggagc                ---------------------------------------------------------caacaaaccactcccccaa
        acgtaccc                ---------------------------------------------------------agaatagatatattgaagc
                                                                                                            

Query   PHSGRRHRVFGHSRHDQAGSQEQVDPAPPGESVEIPQDKRLUKKGKTSCKNQLTUNWQTASDSALSSUCCHCRHLLFEELGNSVTUQCRGALPNSCRUHG
         |    ||  || ||/     /         /    | ||||/||   |  || ||||  / ||  ||| ||||||||/| /  /| ||| ||/||||||
Target  HHRHHGHRPHGHRRHNNRDQNKDSQAGSQVVASGPSQGKRLURKGNAICNRQLNUNWQQLTGSASGSUCUHCRHLLFEDLRSVASUHCRGELPSSCRUHG
        ccaccgcaccgcaccaaagcaagacggacgggagctcgaactcagagatacccatatcccagtgtgatttctcctctggccaggttctcggcctttctcg
        aagaagagcagaggaaagaaaaagacggattcggccagagtggagactgagatagagaatcgcccgggggaggatttaatggtccgagggatcccgggag
        ttattctattctattccacacattgagcgtacctccggggtaaaatccccaggcacggggagtaaccacactgtggcatgcctccacttagcatccgacg
                                                 *            *            * *               *           *  

Query   QLSAEDITESUQURLLTAAUQSPAAGASEASDTUQUEEKARNUAUET
        || ||// || |||| ||||/| ||   | /| |||  /| ||||/|
Target  QLLAENVIESCQURLPTAAURSQAADELETTDVUQUAGRAENUAUKT
        cctggagagttctcccaggtctcggggcgaaggtctggaggatgtaa
        attcaattacgaggtccccggcaccaataccatgagcggcaagcgac
        gggagtctgttgacgggttagaaaatgtacctcagaagggacacaaa
                  * *      *             * *      * *  
 Sequence until next stop: 
ATCTAA
 I  * 

 Distance CDS-SECIS: 1150 ; UGA-SECIS: 1156

------- SECIS element -- id:2 -- grade:A ----
 Chromosome = CEMB01031586.1 Strand = + Positions = 105811 - 105887
 Found by:  Infernal (score=22.91) Covels (score=15.15)
 Stem2 length = 10   Apical loop length = 10   Insertion in stem2 = 0, 0
 Free Energy = -23.42

         ..(((((((........((((((((((.(((((...............))))).))))))))))..........)))))))..
 model   uucggucaugcg-UuaAUGAcGgccug-gcccuAAAcCcuuuuuggggcgggc-caggcCuGAUGuu-u-uuucaugaccggc
         (((((((((((......([[{((((({{(((((........-----..)))))}})))))}]])......-.)))))))))))
 target  GUGUUUGCCAUUUUUUAUGAUGGUUUAAUAGGAAAACUUAU-----GCUCCUACAAAACCUGAAUUCUUU-UAUGGUGAACGC
                          ****            ^^^                        ****