_________________________________.______________________._________________________________________________________________________________ _|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| | knownSP | secis_index:1 SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_ _________________________________|______________________|_________________________________________________________________________________ Blastx evalue: 4e-27 Query name: gi|975104042|ref|XP_015267290.1| PREDICTED: selenoprotein O [Gekko japonicus] Query range: 16-667 (total 667) Target: /data/www-rg/seblastian_results/332065014/tempfiles/temptarget.fasta Chromosome: CEMB01025919.1 Strand: + Positions: -Exon 1 101039 101508 -Exon 2 103007 103210 -Exon 3 103657 103837 -Exon 4 107586 107716 -Exon 5 108402 108682 -Exon 6 108862 109012 -Exon 7 109457 109642 -Exon 8 110196 110352 -Exon 9 110544 110735 Redox box: YES Query RWLTRAAMEAGVGSPAGEALRWLGTFRFDNRALRALPLDPCEENVPRAVASACFSRVRPTPVQNPQLVALSLPALALLGLREPRTPREEAELEAEAALYF | || | / | || |||| |||||||||||/|| |||||| || ||||||||||| |||||| | |||||||||||| | | |||||||| Target RRLTGMATASSSPSSPDEAPRWLGALRFDNRALRALPVDPSEENVPRPVAGACFSRVRPTPVANPQLVAASAPALALLGLREPRAPEE----EAEAALYF cccagagagtttcttcgggcctcggcctgacgccgccggcaggagcccggggtttcgccacggacccgggtgcgtgccgcagccgcgg----gggggctt ggtcgtccccccccccaaccggtgctgtaagctgctctacgaaatcgctcgcgtcgtgccctcacattcccccctcttgtgacgccaa----acacctat tccacgtccccggcctcgttggcggcgcccggggcgggcgtggcgtggggctcccgggggggccggccgtgggtggggcgggcgggga----acgcgccc Query SGNRTLPGSEPAAHCYCGHQFGSFAGQLGDGAAMYLGEVLNPRGERWEIQLKGAGLTPFSR <---Intron---> QADGRKVLRSSIREFLCSEGMFH |||| ||/||||||||||||||||||||||||/||||||||/|||||||||||||||||| < 1498bp > ||||||||||||||||||| ||| Target SGNRLPPGAEPAAHCYCGHQFGSFAGQLGDGAAIYLGEVLNPQGERWEIQLKGAGLTPFSR QADGRKVLRSSIREFLCSEAMFH agaccccgggcggctttgcctgatggccgggggatcgggcaccggctgaccagggcacttc cgggcagcctaaagtctaggatc ggagtccgcacccagaggaatggtcgatgagcctatgattacagaggatatagcgtcctcg acaggattgcgtgattggactta cgccgggccacccccccccgcccccgggcccgcctgcgggcggcgcggcgggccctcccc aaatttatagctaaactttaagtt Query LGIPTTRAGTCVTSDSEVIRDIFYDGNPKKEKCTVVLRIAPTFIR <---Intron---> FGSFEIFKPPDEYTGRKGPSVNRNEIRIQMLDYVISTFY ||||||||||||||||||||||||||||||||||||||||||||| < 446bp > ||||||||| ||||||||||||||/|||||||||||||| Target LGIPTTRAGTCVTSDSEVIRDIFYDGNPKKEKCTVVLRIAPTFIR FGSFEIFKPADEYTGRKGPSVNRNDIRIQMLDYVISTFY tgacaaaggatgatgtggacgattggacaagataggcaagcataa tgttgatacgggtagcagcagaaagacacacgtgaaatt tgtcccgcgcgtccacattgattaagacaaaagctttgtcccttg tgctattaccaaacggagcgtagaatgtattaattgcta aaacacataataaataattactttttccaaagtatcgaaaaatt gtaatattaattataatatctttgtttaaagtttacctct Query PEILQAHPDNNIQRNAAFFRE <---Intron---> VTLRTARMVAEWQCVGFCHGVLNTDNMSIVGLTIDYGPFGFMDR <---Intron---> YDP ||||/|/ || //|||||||| < 3748bp > |/ ||||||||||/||||||||||||||||||||||||||||| < 685bp > ||| Target PEILEAYKDNTVERNAAFFRE VSKCTARMVAEWQCIGFCHGVLNTDNMSIVGLTIDYGPFGFMDR YDP cgacggtagaaggaaggttcg gtatagaagggtctagttcggcaagaaaaggcaagtgctgtaga tgc cattacaaaactagaccttga tcagccgttcagagtgtgagttacaatgttgtctaagctgttag aac agtgaatactttgatttccag gagtaaggttagattattctggctccgcttatatctattatgc actt Query EHICNGSDNTGRYAYNKQPEICKWNLGKLAEALVPELPLDISMPILEEEYNAEFEAHYMQLMRRKLGFIQLQLEDDNKLVSDLLETMHVTG <---Intr ||||||||| ||||||||||||||||||||||||||||||||/|||||/|/||/| ||/| ||/|||||||||//|/||/|| |||||||| < 179b Target EHICNGSDNAGRYAYNKQPEICKWNLGKLAEALVPELPLDISIPILEEDYDAEYERHYLQKMRKKLGFIQLQLDEDDKLISDFLETMHVTG gcatagtgaggctgtaaccgatatacgacgggtgcgcccgaaacacgggtgggtgacttcaaaaacgtaccctggggatatgttgaacgag aatgagcaacggacaaaacatgagatgatcacttcatctatgtcttaaaaacaaagaataatgaatgttatataaaaattcattactatc attctgttttacttttgaaattggtacattacgcaacagcccactgaatttaatggttgaagagaaactacgatattagttccaatgtga Query on---> ADFTNTFRLLSSFSVNSDPSSLENFLDKISKQCASIEELKVAYKPQMDPR <---Intron---> QLSMMLMLAQSNPQLFALIGTKSNINK p > ||||||||||||| |//|| ||/|||||| ||||/|||||||||||||| < 444bp > ||||||||||||||||||||||||||| Target ADFTNTFRLLSSFPVDADPLKLEDFLDKISNQCASLEELKVAYKPQMDPR QLSMMLMLAQSNPQLFALIGTKSNINK ggtaaatctcattcggggctacggttgaatactgttggcaggtaccagca cctaatatgctaccctgtagaataaaa gcatcactgttgctctacactataattaatcaagcctaatatcaacatacg atctttttcacacattcttgcacataa tattattccggttcaatatgaagatcacgtatgtatgaagattcgtagtc gataggggaagtcaaatcataaattatg Query ELERIEQFSKLQQLSAAELLSRNKGHWKDWLLNYR <---Intron---> VRLEKELEHTSDAGAWSAERVKVMNLNNPKYILRNYIAQNAIEAAENGD |||||||||||||//| ||||/||||||/|| /|| < 553bp > |||||/|/ | ||| | ||||| ||||||||||||||||||||||| Target ELERIEQFSKLQQITAPELLSKNKGHWKEWLQSYR TRLEKEMENISSTEAWSTEHVKVMNSNNPKYILRNYIAQNAIEAAENGD gcgcagcttacccaagcgtcaaaagctagtccata accgagagaaaaaggtaagcgagaataacatataatagcagaggggagg atagtaatcataatcccattgaaagagaagtagag cgtaaataatggcacggcaatattacaacaattgaatcaactaccaaga agggaaactgggaaaaaagtcatatcgaaggacc aaaagaagacccctacgctgtgatgtactaatcgatcttacaagaaatcc Query FSE <---Intron---> VQKVLKLLEKPYEDTECYGEEPAEEEE---VAVAAACSSMTSSRLPYSSKPPLWASELCVTUSS | | < 191bp > | ||||||||||||| || ||| |||| || |/|||| |/||/|||||||||||||||| Target FVE VGKVLKLLEKPYEDTGCYSEEPEEEEEEAAVAAASACSSPAQRRVPYNSKPPLWASELCVTUSS tgg ggagtactgactggagttaggcggggggggggggtgtatcgcaagctaaaccctgtgctgattt tta tgattattaacaaacggagaacaaaaaacctcccccggcccaggtcaagacctgccatgtcgcc tgg aaacgacaagctgcaatctggagagagaatgtaatccttacagatatctatccgtagcttcatg * Sequence until next stop: TAA * Distance CDS-SECIS: 274 ; UGA-SECIS: 280 ------- SECIS element -- id:1 -- grade:A ---- Chromosome = CEMB01025919.1 strand = + Positions = 111010 - 111082 Found by: Infernal (score=19.6) Covels (score=22.08) Stem2 length = 11 Apical loop length = 17 Insertion in stem2 = 0, 0 Free Energy = -10.73 ..(((((((.......((((((((((.(((((...............))))).))))))))))........))))))).. model uucggucaugcgUuaAUGAcGgccug-gcccuAAAcCcuuuuuggggcgggc-caggcCuGAUGuuuuuucaugaccggc ..(({{((.---....([[((((((((((((.................))))))))))))]])----.....))}})).. target AAAUCUGUA---UUUGUGAAGGCAAAAAUAGCAAACCCAAUGUUGGAUCUAUUUUUGUCUGAA----AAUUAACUAAUAG **** ^^^ ****