_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:QUE_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 7e-24
 Query name: gi|975116684|ref|XP_015273651.1| PREDICTED: selenoprotein M [Gekko japonicus]
 Query range: 36-117  (total 122)

 Target: /data/www-rg/seblastian_results/82204431/tempfiles/temptarget.fasta
 Chromosome: CEMB01008420.1 Strand: +
 Positions:
 -Exon 1  96813        96881
 -Exon 2  100361       100537

 Redox box: YES

Query   RLEGLARGKVESCGGURLNRLKE <---Intron---> RIPLSDMTREEINQLVQDLGFYRKESPDSPVPEEFHLAPARPLPTSEEAKKDPVAKRKG
        //  |    //|||||||||||| <   3479bp   > ||||||||||||| |||/|||||||/|| ||||||  |||/| | ||||||/|  / ||
Target  KISFLLSSCLQSCGGURLNRLKE                RIPLSDMTREEINHLVQELGFYRKETPDGPVPEEFQQAPAKPWPASEEAKKNPRPEEKG
        aattcctttccatggtccaccag                aaccagaacggaaccgcgcgttcagacggcgcggtccgcgactcgtgggaaacacggag
        atctttccgtaggggggtagtaa                gtctgatcgaataattaatgtagaaccagctcaataacccacgcccaacaaacgcaaag
        accttctccggctaaaggccgag                gccctcgcggacccgcgggcccgggccccccgggcgacacgcgtctgacggccgagggg
                       *                                                                                  
 Sequence until next stop: 
GCTACGGGTGAGGAGCTCTAG
 A  T  G  E  E  L  * 

 Distance CDS-SECIS: 762 ; UGA-SECIS: 960

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = CEMB01008420.1 Strand = + Positions = 101300 - 101375
 Found by:  Infernal (score=26.16) Covels (score=22.83)
 Stem2 length = 10   Apical loop length = 11   Insertion in stem2 = 0, 0
 Free Energy = -21.13

         ..(((((((..........(((((((((((((((...............)))))))))))))))..........)))))))..
 model   uucggucaugcg---UuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuu-u-uuucaugaccggc
         ..((((({((.........{[[{((((((((((......-..-----...))))))))))}]]}......-..))})))))..
 target  CCAUGGGCCGGGGACAGGAUGAAGCCCUUUGCAGAAAAC-UC-----UGGUGCAGAGGGCCGAUCGACAA-AGUGUCCCAUCC
                            ****           ^^^                       ****