_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 2e-28
 Query name: gi|1033379888|ref|XP_008120773.2| PREDICTED: ethanolaminephosphotransferase 1 [Anolis carolinensis]
 Query range: 4-393  (total 410)

 Target: /data/www-rg/seblastian_results/108465189/tempfiles/temptarget.fasta
 Chromosome:CMB01020366.1 Strand: -
 Positions:
 -Exon 1  108985       109101
 -Exon 2  108473       108581
 -Exon 3  107189       107263
 -Exon 4  105759       106021
 -Exon 5  103496       103604
 -Exon 6  100546       100594
 -Exon 7  99994        100174
 -Exon 8  98785        98967
 -Exon 9  97441        97524

 Redox box: no

Query   YEYVSAEQLAGFDKYKYSAVDSNPLSLYVMHPFWNTVVK <---Intron---> IFPTWLAPNLITFCGFLLLVFNFFLMAYFDPDFYASA <---Int
        / /||   |     //|||||/||||||||||||||||| <   403bp    > ||| |||||||||||||||||||||||||| |||||| <   120
Target  WAFVSNPLLPSRLPFQYSAVDNNPLSLYVMHPFWNTVVK                IFPMWLAPNLITFCGFLLLVFNFFLMAYFDRDFYASA        
        tgtgtacccctccctctagggaacctctgaccttaagga                atcatcgcataattgtcccgtattcagttgcgttgtg        
        gcttcacttccgtctaagctaaactctattactgactta                ttctgtccattctggttttttattttcatagatacc         
        gcccccttcctgttcgcttgcccgccccggcccgcgggg                tctgggcatgagtcccggtccccccggctcccttct         
                                                                                                            

Query   ron---> PDQEHVPNAIWVVVGLLNFMAYTLD <---Intron---> GVDGKQARRTQSSTPLGELFDHGLDSWACMFFVVTVYSTFGRGPNGVSVFV
        9bp   > |||||||/ /||||||||||||||| <   1167bp   > ||||||||||||||||||||||||||||||||||||||||||| |||||||
Target          PDQEHVPSGVWVVVGLLNFMAYTLD                GVDGKQARRTQSSTPLGELFDHGLDSWACMFFVVTVYSTFGRGTNGVSVFV
                cgcgcgcaggtggggccatagtatg                ggggacgccactaaccggctgcgcgatgtattggagttatgcgaaggagtg
               ccaaaatcggtgtttgttattcact                agtagaacggcacgcctgattaagtaggcgtttttctacctgggcagtgttt
               ggtggtcgcaggccgtcctcgtcga                tcgcggggtccgccgggggctcccgccgccgccggcccccccggcccccccc
                                                                                                            

Query   LYLLLWVVLFSFILSHWEKYNTGILFLPWGYDISQV <---Intron---> TITIVYIVTSIVGVEAWYNPFLFNFFYRDLFVAMIVG <---Intron
        |||||||||||||||||||||||||||||||||||| <   2154bp   > ||//||||||||||| ||/||||/| |||||||||/| <   2901bp
Target  LYLLLWVVLFSFILSHWEKYNTGILFLPWGYDISQV                TISVVYIVTSIVGVEVWYSPFLFSFLYRDLFVAMIIG           
        ctccctggttttactctgataagactcctgtgaacg                aatggtagatagggggttactctatttcgctggaaag           
        tatttgttttctttcagaaaacgttttcggaatgat                ctcttattccttgtatgagctttgttagatttcttt            
        cctcgggcgcccccccgggccggcccacggccccgg                cttccttggcctggacgcctccctcacgcgctggcc            
                                                                                                            

Query   ---> CGLTVTVPMSLLNYYK <---Intron---> AYKSKTLKHRSAYEALLPFLSPVLLFALCSAWIFWSPTDILEAHPRLFYFMVGTAFANIS <-
           > | / |||||||||||| <   371bp    > |||//|||||| |||/|||||||||| ||/|||||||/||||||||||||/||||||||| < 
Target       CAVLVTVPMSLLNYYK                AYKTRTLKHRSFYEAMLPFLSPVLLFILCTAWIFWSPSDILEAHPRLFYFLVGTAFANIS   
             tggcgagcaaccatta                gtaacacacctttggatctctcgcctactagtatttctgacggccccttttggagtgaat   
            ggctttctctgttaaaa                caacgctaagctaacttcttccttttttgccgttgcccattacacgttatttgcctcatc   
            ttccgccttgcggtcc                accagacggcgcccgcggccgcgggcccgctcgccgggctcggcccctcccggggcttccc   
                                                                                                            

Query   --Intron---> CRLIVCQMSSTRCQPLNILLLPLALAILAVVSGVLAQQETLLLYLLTCLITAAHIHYGVSV <---Intron---> VSQLSQHFHI
          1026bp   > |||||||||/||||||| ||||||| /| | |  | / || ||||/|  || ||||||| | <   1260bp   > |||||/||/|
Target               CRLIVCQMSNTRCQPLNWLLLPLALVVLLVTSNALPEHETFLLYLVTTFITLAHIHYGVCV                VSQLSKHFNI
                     tccagtcaaaactcccatcccccgcggtcgatagccgcgatccttgaataacgcactggtg                gaccaactaa
                     ggtttgatgacggactagtttctcttttttccactcaaactttattccttctcataagtgt                tgatgaatat
                     ccgcccggccgacggccggccgcccgcgggccccgggcgcccccgcccctcgcccttactg                gcggtgtccc
                                                                                                            

Query   RTFSLRKPSSDULGVEEA
         |||||||||||| || |
Target  CTFSLRKPSSDULDVEVA
        tattccacatgtcggggg
        gctctgacgcagtatatc
        cctggagccctaacggga
                   *      
 Sequence until next stop: 
GCGGAGGAGAAGGTGGGCCTGTGA
 A  E  E  K  V  G  L  * 

 Distance CDS-SECIS: 1088 ; UGA-SECIS: 1106

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = CMB01020366.1 Strand = - Positions = 96352 - 96271
 Found by:  Infernal (score=32.66) Covels (score=22.0)
 Stem2 length = 10   Apical loop length = 19   Insertion in stem2 = 0, 0
 Free Energy = -20.27

         ..(((((((.......(((((((((((((((...................))))))))))))))).........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcC----cuuuuuggggcgggccaggcCuGAUGuuu-uuucaugaccggc
         ...((((((.......([[[({(((((((((...................)))))))))})]]]).....-...))))))...
 target  UAUCUGUGUCCUUGAAUGAAGAGUGCAGCCUAAACCCAAGCUUCUUGGAAAGGCUGCACCCGGAAAAAAC-GGAGCGCAGCGA
                         ****           ^^^                           ****