________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:3     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 3e-05
 Query name: gi|975113955|ref|XP_015272191.1| PREDICTED: 15 kDa selenoprotein isoform X2 [Gekko japonicus]
 Query range: 1-100  (total 134)

 Target: /data/www-rg/seblastian_results/79617107/tempfiles/temptarget.fasta
 Chromosome: CEMB01029493.1 Strand: -
 Positions:
 -Exon 1  104609       104677
 -Exon 2  100039       100206
 -Exon 3  82024        82086

 Redox box: no

Query   MAGKKGVMDRGHYWVWLLATLQA <---Intron---> VSVYGTELSSEACRELGFSSNLLCSSCDLLSQFGLSELDPFCRKCCQEEAQPEAKK <---
        || /||/ / |  |||||||||| <   4402bp   >  |||| |||||||||||||||||||||||| ||||//|||||||||||||| | /| <  1
Target  MAMEKGLGNLGRCWVWLLATLQA                ASVYGAELSSEACRELGFSSNLLCSSCDLLGQFGLNQLDPFCRKCCQEEAQAEIRK     
        agagagcgatgcttgttcgatcg                gtgtgggtttggtagcgttaatctattgccgctgtactgcttaattcgggcggaaa     
        tctaagtgatggggtgttcctac                cctagcatccacggatgtcgattggcgattgatgtaatactggaggaaacacatga     
        ggggaaggcggccgggggggggg                gtctaaagacactaggctctcggctttcttcgtcgtggtaccagccaaataagcag     
                                                                                                            

Query   Intron---> LYSGAILEVCGUKLGRFPQVQ
        7952bp   > |||||/|||||||||||||||
Target             LYSGAVLEVCGUKLGRFPQVQ
                   cttgggcggtgtatgatccgc
                   tacgcttatgggatggtcata
                   ctaaattagtaaaaggctatg
                              *         
 Sequence until next stop: 
GGTAAGTACAATTGGAACTAA
 G  K  Y  N  W  N  * 

 Distance CDS-SECIS: 2772 ; UGA-SECIS: 2799

------- SECIS element -- id:3 -- grade:B ----
 Chromosome = CEMB01029493.1 Strand = - Positions = 79251 - 79174
 Found by:  Infernal (score=12.03) Covels (score=10.77)
 Stem2 length = 9   Apical loop length = 18   Insertion in stem2 = 0, 0
 Free Energy = -6.21

         ..(((((((.......(((((((((((((((................)))))))))))))))..........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcC-cuuuuuggggcgggccaggcCuGAUGuu-u-uuucaugaccggc
         ..(((({((.--....([[{(((((({(((..................)))}))))))}]])......-...))}))))..
 target  CAGCGCAAUU--UCUAUGACACAAAUAAGUGAAACACAAUUUUGCAUAAUUCAUUUGUAGAAAAUCCU-ACUGUAGUGUGA
                         ****           ^^^                        ****