_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:QUE_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 7e-20
 Query name: gi|1033368099|ref|XP_016851024.1| PREDICTED: redox-regulatory protein FAM213A isoform X3 [Anolis carolinensis]
 Query range: 1-229  (total 229)

 Target: /data/www-rg/seblastian_results/86490705/tempfiles/temptarget.fasta
 Chromosome: CEMB01004403.1 Strand: +
 Positions:
 -Exon 1  100015       100192
 -Exon 2  100623       100717
 -Exon 3  102380       102520
 -Exon 4  105286       105450
 -Exon 5  107377       107484

 Redox box: YES

Query   MCSHLELGSFSVAMWTIGLGAIGAAVTGIILANTDLFLSKAEQASLDFLEAIDLKTLGEG <---Intron---> NQRTFKAEELWKKNGAVIMAVRRP
        | | |/ |/||||||||||||||||||||||||||||||/||/||||||||||||||||| <   430bp    >  ||||/||||||||||||||||||
Target  MFSQLDQGNFSVAMWTIGLGAIGAAVTGIILANTDLFLSQAEKASLDFLEAIDLKTLGEG                EQRTFRAEELWKKNGAVIMAVRRP
        attccgcgattggataagcggaggggagaacgaagttctcggagtcgtcggagcaacggg                gcaatagggctaaagggaaggccc
        ttcataagatctctgctgtgctgcctcgtttcacatttcacaacctattactatactga                gaagctgcaatgaaagctttctggc
        gtaatcggtttgaggctttactgttgagacgttatatgtatagcagttggaatggtgga                agaaacaaagggggtgcccgaggaa
                                                                                                            

Query   GUFLCRE <---Intron---> EAAELSSLKPQLDKLGVPLYAVVKENLGTEVMDFQPYFKGEIFLDEK <---Intron---> KQFYGPQKRKMLFM
        ||||||| <   1662bp   > |||||||||||||//|||||||||||/|||| ||||||||||||||| <   2765bp   > ||||||||||||||
Target  GUFLCRE                EAAELSSLKPQLDQVGVPLYAVVKENIGTEVQDFQPYFKGEIFLDEK                KQFYGPQKRKMLFM
        gttttag                ggggcttcacccgcgggcttgggagaagaggcgtccttaggatcgga                acttgccaaaatta
        ggttgga                accatcctacataatgtctacttaaatgcataatacatagatttaaa                aatagcaagatttt
        aatgcag                gttgtctggcgtcgcgccatttgagctaggggttgaccaaaatgtag                aactgtgaaaggcg
         *                                                                                                  

Query   GFIRCSVWRNFFRAWKSGYTGNIDGEGFVLGGVFVVGPGKQ <---Intron---> GVLLEHREKEFGDKVSLDAVLEAVKNIQPQPSEKDK
        ||||||||||||||||||||||/|||||||||||||||||| <   1926bp   > |||||||||||||||||||||/||| |/ ||/| /|
Target  GFIRCSVWRNFFRAWKSGYTGNLDGEGFVLGGVFVVGPGKQ                GVLLEHREKEFGDKVSLDAVLDAVKKIKLQPAENEK
        gtactagtaattcgtaagtagatggggtgcgggtgggcgac                ggctgccgagtggagacgggcgggaaaacccggaga
        gttgggtggattgcgaggacgatagagtttggttttgcgaa                gtttaagaaatgaatgtacttactaatataccaaaa
        ctcccccggtcctcggtataacgtaactcgaattgtttagg                ttcggttggatacagcctttttttggcgggtaatga
                                                                                                     
 Sequence until next stop: 
TAG
 * 

 Distance CDS-SECIS: 152 ; UGA-SECIS: 581

------- SECIS element -- id:1 -- grade:B ----
 Chromosome = CEMB01004403.1 Strand = + Positions = 107637 - 107701
 Found by:  Infernal (score=16.49) Covels (score=11.72)
 Stem2 length = 9   Apical loop length = 9   Insertion in stem2 = 0, 0
 Free Energy = -20.5

         ..(((((((.......((((((((((.(((((...............))))).))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccug-gcccuAAAcCcuuuuuggggcgggc-caggcCuGAUGuuuuuucaugaccggc
         .({((((((---....{[[{{(((({(((((......--------...)))))}))))}}]]}----....))))))}).
 target  CUUACUGGA---UUAAUGAAAGGCUUGGUCUGAAAAC--------UUAAGAUCUGGCCAAGAU----AUUUUCCAGUUAA
                         ****            ^^^                        ****