_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:QUE_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 1e-13
 Query name: gi|1004692848|ref|XP_007441502.2| PREDICTED: selenoprotein K isoform X2 [Python bivittatus]
 Query range: 1-93  (total 93)

 Target: /data/www-rg/seblastian_results/793333189/tempfiles/temptarget.fasta
 Chromosome: CEMB01006654.1 Strand: -
 Positions:
 -Exon 1  102474       102492
 -Exon 2  99998        100088
 -Exon 3  98460        98537
 -Exon 4  97390        97480

 Redox box: no

Query   MVYISNG <---Intron---> QVLDSRSRAPWSLSSITDFFWGIADFIVMF <---Intron---> FQSIIHPDLRRGYTSSSSSRYDDGRG <---
        ||||||| <   2385bp   > |||||||||||||||||||||||||||||| <   1460bp   > |||||||||||||/|||||||||||| <   
Target  MVYISNG                QVLDSRSRAPWSLSSITDFFWGIADFIVMF                FQSIIHPDLRRGYSSSSSSRYDDGRG     
        agtatag                cgtgacacgctatttaagtttgaggtagat                tcaaaccgtaagtttttttatgggag     
        ttatca                gattaggggccggtcctcattggtcattttt                tagttacatgggaccccccgaaaggg     
        ggctgt                aaggtcgcgttgtgagatcttgaaaccatg                ttacttcatggaccatcctaatctaa      
                                                                                                            

Query   Intron---> PPGFPRRRMGRINHFGGPSPPPMAGGGUGR
        979bp    > ||||||||||||||||||||||||||||||
Target             PPGFPRRRMGRINHFGGPSPPPMAGGGUGR
                   ccgtcccaagcaactggcacccaggggtga
                   ccgtcgggtggtaatggcgccctcgggggg
                  ataatttcagtaatctttatcaagaataaag
                                              *  
 Sequence until next stop: 
TAA
 * 

 Distance CDS-SECIS: 1773 ; UGA-SECIS: 1779

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = CEMB01006654.1 Strand = - Positions = 95616 - 95533
 Found by:  Infernal (score=22.27) Covels (score=29.77)
 Stem2 length = 11   Apical loop length = 17   Insertion in stem2 = 0, 0
 Free Energy = -8.24

         ..(((((((........(((((((((((((((.................)))))))))))))))............)))))))..
 model   uucggucaugcg-UuaAUGAcGgccuggcccuAAAcC--cuuuuuggggcgggccaggcCuGAUGuu---u-uuucaugaccggc
         ..(({((((........([[((((((((((((.................))))))))))))]])........-...))))}))..
 target  GUGGAUUAGCAGAUCAAUGAAGUUGUGCUGGGAAUUCCUUUUUCUAGGAUCCAGUGUAACUGAAAUGCAGUU-CUAUUAAAUCUA
                          ****           ^^                          ****