_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 2e-24
 Query name: gi|1033369879|ref|XP_008115022.2| PREDICTED: methionine-R-sulfoxide reductase B1 [Anolis carolinensis]
 Query range: 18-113  (total 113)

 Target: /data/www-rg/seblastian_results/240077842/tempfiles/temptarget.fasta
 Chromosome: CEMB01034240.1 Strand: +
 Positions:
 -Exon 1  100003       100149
 -Exon 2  101337       101451
 -Exon 3  102099       102124

 Redox box: no

Query   AGMYVCSKCGFELFSSKSKYAHSSPWPAFTETIHDDSITKYLERPNAFK <---Intron---> VLCGKCGNGLGHEFINDGPKKGQSRFUIFSSSLKF
        ||/| ||/||/||||||||| |||||| ||||||/||//|||||| ||| <   1187bp   > ||||||||||||||||||||/||||||||||/|/|
Target  AGIYACSRCGYELFSSKSKYVHSSPWPTFTETIHEDSVSKYLERPGAFK                VLCGKCGNGLGHEFINDGPKEGQSRFUIFSSTLRF
        ggatgttctgtgcttaatatgcttctcatagaacggagtattgccggta                gttgatgagcgcgtaaggcaggctcttataaacat
        cgtacgcgggaattcgacaatacccgcctcactaaagtcaatagcgcta                ttggaggagtgaattaagcaagacgtgttggctgt
        agcccccatccgtcctgaactcccagattcagtcgccccgcagcggtcg                catcgccctgccgtcctcaggcgtccaattcccgt
                                                                                                   *        

Query   VPKD <---Intron---> KVEKSLRK
        /||| <   647bp    > ||||/|||
Target  IPKD                KVEKNLRK
        acag                aggaacaa
        tca                aataaatga
        caa                catggtgga
                                    
 Sequence until next stop: 
TAA
 * 

 Distance CDS-SECIS: 1124 ; UGA-SECIS: 1184

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = CEMB01034240.1 Strand = + Positions = 103249 - 103330
 Found by:  Infernal (score=25.9) Covels (score=26.11)
 Stem2 length = 11   Apical loop length = 16   Insertion in stem2 = 0, 0
 Free Energy = -26.68

         ..(((((((........(((((((((((((((................)))))))))))))))...........)))))))..
 model   uucggucaugcg-UuaAUGAcGgccuggcccuAAAcC-cuuuuuggggcgggccaggcCuGAUGuu--u-uuucaugaccggc
         .((((((({(.......([[[(((((((((((................)))))))))))]]]).......-..)}))))))).
 target  AAGGUAGCAUUGUUGUAUGAAUCGCCUCUGCUAAACCCUUUUCUGGAGAGCAGGGGUGAGGAGAGUUUAG-AUGAGCUACCUA
                          ****           ^^^                        ****