_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 4e-28
 Query name: gi|1004686949|ref|XP_007435318.2| PREDICTED: phospholipid hydroperoxide glutathione peroxidase, mitochondrial [Python bivittatus]
 Query range: 1-184  (total 194)

 Target: /data/www-rg/seblastian_results/163886540/tempfiles/temptarget.fasta
 Chromosome: CEMB01020348.1 Strand: -
 Positions:
 -Exon 1  105959       106033
 -Exon 2  101704       101798
 -Exon 3  101211       101355
 -Exon 4  99998        100149
 -Exon 5  98439        98463
 -Exon 6  97538        97597

 Redox box: no

Query   MSLRRLASKTLLCGLLIGRGLTRAM <---Intron---> CAQVTDWQSAKSIYEFHAKDIDGNDVSLEKYR <---Intron---> GHVCIITNIAS
        ||||||  /||||| /  ||||| | <   4160bp   > ||| |||||||||||||| ||||||||||||| <   348bp    > |/||||||/||
Target  MSLRRLLRRTLLCGAVATRGLTRTM                CAQETDWQSAKSIYEFHAMDIDGNDVSLEKYR                GYVCIITNVAS
        aatacttacacttggggacgcacaa                tgcgagtctgatatgtcgagaggaggtcgatc                gtgtaaaaggt
        tgtggttggcttggctccggtcgct                gcaacagaccactaatactatagaatctaaag                gatgttcatcc
        gcggcagggtggttgtctacgcgcg                ccgagcgggcacccgctcgttcgttctggac                gccccccccgca
                                                                                                            

Query   EUGKTNVNYTQFVELYSRYAERGLRILAFPCNQFGKQ <---Intron---> EPGTNEEIKAFAEGYGVKFDMFSKIDVNGDGAHPLWKWMKSQPKGRG
        /|||| |||||||/|| |||||||||||||||||||| <   1061bp   > |||||||||||| ||||||||||||||||||||||||||||||||||
Target  KUGKTGVNYTQFVDLYGRYAERGLRILAFPCNQFGKQ                EPGTNEEIKAFAAGYGVKFDMFSKIDVNGDGAHPLWKWMKSQPKGRG
        atgaaggatactggctgctggagtcacgtctactgac                gcgaaggaagtgggtggatgataaaggaggggccctataaaccagag
        aggacgtaacattataggacaggtgttctcgaatgaa                acgcaaatactccgagtatattgatatagagcactgagtagacaggg
        gacggcacctgttccccactgataccgtccccgtcag                gctacggtatttcccgggccgccgccgtgctcctcgggggcggacgg
         *                                                                                                  

Query   TLGN <---Intron---> AIKWNFSK <---Intron---> FLINREGQVVKRFSPMDDPF
        |/|| <   1534bp   > |||||||| <   841bp    > ||||/|||||||/|||||||
Target  TMGN                AIKWNFSK                FLINKEGQVVKRYSPMDDPF
        aaga                gaatataa                tcaaaggcggaatacaggct
        ctga                ctagatga                tttaaagattagagctaact
        gga                cgcggcccg                ccccagcaggggctcgtccc
                                                                        
 Sequence until next stop: 
GTAAGTCCCCCCCCTTCTTTGACTTTCTTTTTTGCCTCTGGTGGGGAGTCCCCGAGAACGAGCAGCCCGACGCCGGGTGGGGAGGGAGACCCTTTGCCCTAA
 V  S  P  P  P  S  L  T  F  F  F  A  S  G  G  E  S  P  R  T  S  S  P  T  P  G  G  E  G  D  P  L  P  * 

 Distance CDS-SECIS: 455 ; UGA-SECIS: 797

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = CEMB01020348.1 Strand = - Positions = 97082 - 96999
 Found by:  Infernal (score=36.28) Covels (score=35.99)
 Stem2 length = 11   Apical loop length = 18   Insertion in stem2 = 0, 0
 Free Energy = -18.64

         ..(((((((........(((((((((((((((..................)))))))))))))))...........)))))))..
 model   uucggucaugcg-UuaAUGAcGgccuggcccuAAAcC---cuuuuuggggcgggccaggcCuGAUGuu--u-uuucaugaccggc
         ..(({((((........([[{(((((((((((..................)))))))))))}]]).......-...))))}))..
 target  GGGAUGCUCAGCUCCAAUGACGGCUUGCCUUGAAACCAAACCUUUCUUGGUGGGGCAGGCCCGAAAACCCAG-CGCGAGCCUUGC
                          ****           ^^^                          ****