_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:QUE_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 1e-40
 Query name: gi|1033394557|ref|XP_003217493.3| PREDICTED: glutathione peroxidase 3 [Anolis carolinensis]
 Query range: 1-223  (total 223)

 Target: /data/www-rg/seblastian_results/175988180/tempfiles/temptarget.fasta
 Chromosome: CEMB01545298.1 Strand: +
 Positions:
 -Exon 1  93858        93944
 -Exon 2  100003       100156
 -Exon 3  102465       102582
 -Exon 4  103057       103156
 -Exon 5  104398       104607

 Redox box: no

Query   MRGRLKGPWIFPLLLAGLIQPNSAQERQK <---Intron---> VDCYDSIPGTVYNYGALSIHGDEYIPFQKYAGKLLLFVNVATYUGLTMQYLE <-
        ||||||  ||||||||||||||  ||| | <   6058bp   > ||||||/ |/|||||||// ||||||||||||||||||||||||||| |||  < 
Target  MRGRLKDTWIFPLLLAGLIQPNWGQERPK                VDCYDSVQGSVYNYGALTLRGDEYIPFQKYAGKLLLFVNVATYUGLTSQYLG   
        aagacagatatctctggtaccatgcgcca                ggttgtgcgagtatggcaccgggtactcatggatcctgaggattgcatctcg   
        tgggtaacgttctttcgttacaggaagca                tagaactaggtaaagctctggaaatctaaacgatttttatccaggtccaat    
        ggcatgcagtccgcattataacgaggaag                gcctcaaaatccctgtctttttgtcccggcagggcctatgctcaacaaatt    
                                                                                                *           

Query   --Intron---> LNALQTELGRYGLVVLGFPCNQFGKQEPGENSEILPGLR <---Intron---> YVRPGGGFTPNFQLFQKGDVNGETEQRVYTFL
          2308bp   > ||||| |||||||//|||||||||||||||||||||||| <   474bp    > |||||||| |||||||||||||| ||||||||
Target               LNALQNELGRYGLIILGFPCNQFGKQEPGENSEILPGLR                YVRPGGGFVPNFQLFQKGDVNGENEQRVYTFL
                     cagccagcgctgtaacgtctactgacgcggatgaccgca                tgacgggtgcatcctcagggaggagcagtatc
                    gtactaaatggagttttgtcgaatgaaacgaacattcgtg                atgcgggttcatattaagatagaaaagtactt
                    agtaaatggactaacctccactataaaataacaactaag                attataactcatcgctgaatacggtagatctta
                                                                                                            

Query   K <---Intron---> NSCPPVIENFGDPNKLFWSPLKIHDIKWNFEKFLVGTDGKPVMRWYHRTNVATVKSDILRYMRKQNLLYG
        | <   1241bp   > ||||||/|||||| |||| ||||||||||||||||| ||||||||||||||||||/||||||||||/|||
Target  K                NSCPPVVENFGDPKKLFWQPLKIHDIKWNFEKFLVGPDGKPVMRWYHRTNVATVKNDILRYMRKQNMLYG
        a                attccgggatggcaacttcctaacgaatatgattggcggacgaattcaaaggagaagacctaaacaattg
        a                acgccttaatgacaattgactataatagataatttgcagacttggaagcatcctaaattgatgaaattag
        g                tatattgacttccgatcgatggcttcggctggtgtggtggttgggtcgattctggtccaacggggcggta
                                                                                               
 Sequence until next stop: 
TAG
 * 

 Distance CDS-SECIS: 564 ; UGA-SECIS: 1014

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = CEMB01545298.1 Strand = + Positions = 105172 - 105267
 Found by:  Infernal (score=24.25) Covels (score=30.52)
 Stem2 length = 10   Apical loop length = 16   Insertion in stem2 = 0, 0
 Free Energy = -10.74

         ..(((((((.......................(((((((((((((((................)))))))))))))))..........)))))))..
 model   uucggucaugcg----------------UuaAUGAcGgccuggcccuAAAcC-cuuuuuggggcgggccaggcCuGAUGuu-u-uuucaugaccggc
         ...(({(((.......................([[{((({(((((((................)))))))})))}]])......-...)))}))...
 target  GGGUUUCUGGGGACAAGGAAGGUGCAACAUUAUGACGGUUAGGUCUGAAAGCUCCCAAAGGAGUAGACCUCGCCUGAGCCUGCA-AGGCAGUGAAGU
                                         ****           ^^^                        ****