_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 2e-74
 Query name: gi|1033388082|ref|XP_008109838.2| PREDICTED: glutathione peroxidase 2 [Anolis carolinensis]
 Query range: 8-206  (total 206)

 Target: /data/www-rg/seblastian_results/572175582/tempfiles/temptarget.fasta
 Chromosome: CEMB01012720.1 Strand: +
 Positions:
 -Exon 1  99973        100221
 -Exon 2  103813       104160

 Redox box: no

Query   LPILVLAAMMTPIAKSFYDLNATDLQGEKVDFNNFRGRVVLIENVASLUGTTVRDYTQMNLLQSKYPRRLVVLGFPCNQFGYQ <---Intron---> E
        | / // | || ||||||||/|||||||||||||||||||||||||||| ||/||||||| |||||||||||||||||||||| <   3591bp   > |
Target  LLLFLVVAAMTAIAKSFYDLSATDLQGEKVDFNNFRGRVVLIENVASLUATTMRDYTQMNQLQSKYPRRLVVLGFPCNQFGYQ                E
        tccttggggaagagatttgcagagccggaggtaatagaggtagaggtctgaaaagtacaacccaatccccggcgtctactgtc                g
        tttttttcctcctcactaatgccatagaatataatgggttttaatcctgccctgaacataatagaacggttttgtcgaatgaa                a
        gggcgttacgtcccaccttccctccaagagtccttggagcgcgcgcccacacggcccggcgggcattaggtcgtctccgtccg                g
                                                        *                                                   

Query   NCTNEEILNSLKHVRPGSGFEPNFTLCQKCEVNGKNTHSVFAYLKDKLPYPDDNPSCLMMEPKFILWSPVSRNDISWNFEKFLVGPEGEPFKRYSPRFLT
        ||||||||||||||||||||/||| ||||||||||||||||||||||||||/|||||||||||||/|/|| |||||||||||||||||||||||||||||
Target  NCTNEEILNSLKHVRPGSGFQPNFILCQKCEVNGKNTHSVFAYLKDKLPYPEDNPSCLMMEPKFIVWNPVQRNDISWNFEKFLVGPEGEPFKRYSPRFLT
        ataaggacaatacgccgtgtccatactcatggagaaactgtgtcagacctcggacttcaagcatagtacgccagattatgatcggcgggctactacctca
        agcaaattagtaatgcgcgtacatttgaagatagaacacttcataaatcacaaaccgtttacatttgactagaatcgataatttgcagactagagcgttc
        ctctaaccccgacagtttatacccattgatagtcgcccactctggcatccaatctcccggacgccagtaggctttggctggcgggtaaatcaccccacct
                                                                                                            

Query   TNIEPDIQRLLKLAK
        |||||||||||||||
Target  TNIEPDIQRLLKLAK
        aaagcgaccccacga
        catacatagttatca
        cttgtccgctggtca
                       
 Sequence until next stop: 
TAA
 * 

 Distance CDS-SECIS: 216 ; UGA-SECIS: 666

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = CEMB01012720.1 Strand = + Positions = 104377 - 104441
 Found by:  Infernal (score=29.89) Covels (score=20.69)
 Stem2 length = 11   Apical loop length = 9   Insertion in stem2 = 0, 0
 Free Energy = -26.0

         ..(((((((.......(((((((((((((((...............)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         .((((((((---....([[{((([(((((((.....-..-----..)))))))])))}]])----....)))))))).
 target  GACUUUUAC---UGUGUGAUGGUGCCCUCCUAAAGC-UC-----AAAGGAGGGAGCCUGAA----AAGUGUAAAGGUG
                         ****           ^^^                       ****