_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 2e-63
 Query name: gi|1002588412|ref|XP_015672821.1| PREDICTED: glutathione peroxidase 1-like [Protobothrops mucrosquamatus] >gi|1002588416|ref|XP_015672823.1| PREDICTED: glutathione peroxidase 1-like [Protobothrops mucrosquamatus]
 Query range: 7-188  (total 199)

 Target: /data/www-rg/seblastian_results/140512098/tempfiles/temptarget.fasta
 Chromosome: CEMB01545308.1 Strand: +
 Positions:
 -Exon 1  99994        100206
 -Exon 2  102456       102788

 Redox box: no

Query   YSLGGIKALPLGASQPIDLGSLRGKVLLVSNVASLUGTTSRDFTQFRELQRRFGSQGLTVLAFPSNQFGHQ <---Intron---> ENATNDEILNSLK
        / | |/|| ||||//|/||||  |/||||||||||||||/||/||| ||||||| /|  ||||| |||||| <   2249bp   > |||||||||||||
Target  FQLAGLKARPLGAAEPVDLGSFLGRVLLVSNVASLUGTTTRDYTQFSELQRRFGPEGFAVLAFPCNQFGHQ                ENATNDEILNSLK
        tccggcagcccggggcggcgttcgcgtcgtaggtctgaaacgtacttgcccctgcggtggcgtctactgcc                gagaaggacatca
        tatcgtacgctgccactatgcttggttttcatcctggcccgaacatcataggtgcagtcttctcgaatgaa                aaccaaattacta
        cggggcggggaaaggcccgtcccccgggtccgggcacggggccggcgggggccggaccgggttgccgcccg                gtccctgcgctag
                                           *                                                                

Query   HVRPGNGYEPNFPVFEKCEVNGENAHPLFKLLKESLPIPHDDPVSLMTDPKFIIWSPVCRSDIAWNFEKFLIGRDGVPFKRYSRKFETIKMKDDIEKL
        |||||/|||||| ||||||||||||||||| ||//|| ||||||||| /|/|||||||||/||||||||||||||||| |||||/|||||///|||||
Target  HVRPGHGYEPNFTVFEKCEVNGENAHPLFKSLKQALPYPHDDPVSLMNNPQFIIWSPVCRNDIAWNFEKFLIGRDGVPIKRYSRRFETIKIQEDIEKL
        cgccgcgtgcatagtgatggaggagccctatcacgtctccggcgtcaaacctaattcgtcagagtatgatcagcgggcaactaactgaaaacggagac
        atgcgagaacatcttaagatagaacacttactaactcacaaactcttaacatttgcctggaatcgataatttggagtctagagggtactataaataat
        tccactatgccctgcgatgctgattcatcacgagagacattctagagtcagcccgtttcctccagctagctttttagtcatccgccatcgtgattaga
                                                                                                          
 Sequence until next stop: 
CTTCACTAA
 L  H  * 

 Distance CDS-SECIS: 398 ; UGA-SECIS: 836

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = CEMB01545308.1 Strand = + Positions = 103187 - 103255
 Found by:  Infernal (score=29.85) Covels (score=16.45)
 Stem2 length = 10   Apical loop length = 9   Insertion in stem2 = 1, 0
 Free Energy = -15.9

         ..(((((((.......((((((((((.(((((...............))))))))))))))).........)))))))..
 model   uucggucaugcgUuaAUGAcGgccug-gcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuu-uuucaugaccggc
         ..((((((((--(...{[[{((((((.((((......--------...))))))))))}]]}.....-.)))))))))..
 target  CUAAAUUUUA--UUCAUGAUGGUGCUUCUUCUAAAGU--------CAUGAAGAGCACUUGAUGUGCU-UGUAAAAUUUUG
                         ****            ^^^                       ****