_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 1e-32
 Query name: gi|1004682006|ref|XP_007432777.2| PREDICTED: type I iodothyronine deiodinase [Python bivittatus]
 Query range: 1-245  (total 245)

 Target: /data/www-rg/seblastian_results/606056581/tempfiles/temptarget.fasta
 Chromosome: CEMB01015858.1 Strand: +
 Positions:
 -Exon 1  95562        95892
 -Exon 2  99998        100141
 -Exon 3  100721       100920
 -Exon 4  102182       102241

 Redox box: no

Query   MFRMKRFMQRIWILLHVCLSTIIGKICMLFFPDTVKRYILKQGGKTSIGENPKFSYENWGPTFFSFPYLFFVLKVKWKRLEDEALQGCPAPNTPVADLSG
        ||///||/|/ |||| ||| | /||| |/ ||||/|||||||| |/ || || | ||||||/|||  || |||||||||||||| |||||||||| |  |
Target  MFKIRRFVQKAWILLQVCLCTAVGKILMILFPDTIKRYILKQGEKSGIGTNPNFVYENWGPSFFSLQYLLFVLKVKWKRLEDEAFQGCPAPNTPVVDFGG
        ataaaatgcagtactcgtctagggaacaattcgaaaatatacggaagagaacatgtgatgcattatcttctgtagataacggggtcgtcgcaacgggtgg
        ttatggttaacgtttatgtgcctgattttttcactagattaagaaggtgcacattaaaggcgttgtaatttttatagagtaaactaggcccaccttatgg
        gtacaataaacgttgagtatttttattgcgcataaaatcgaagggccagactttctacgtaccccgacactcgacggaggatagtatcttccctacttaa
                                                                                                            

Query   EIRHILDFMHG <---Intron---> NRPLVLTFGSCTUPSFIFKFSEFNKLVEDFKSIADFLVIYIEEAHASD <---Intron---> GWAFKNNIV
        /| ||||||   <   4105bp   > ||||||||||||||||/||| |  /|||||||/|||||||/||||||| <   579bp    >  ||||||||
Target  KIHHILDFMQE                NRPLVLTFGSCTUPSFMFKFGELKRLVEDFKSVADFLVIYVEEAHASD                KWAFKNNIV
        aaccacgtacg                aactgcatgatatcttatatggtaacgggtatgggtcgatggggcgtg                atgtaaaag
        ataattatta                aagctttctgggcgcctttatgatagttaatactcattttataacacc                aagctaaatt
        attccgccga                acgtgtaatactcatatgcatcggggttaccataatctgtttaactca                cggccgcttt
                                               *                                                            

Query   IKSHQTLQDRIQAAQILLKEQPLCPVVLDTMENLSSNKYAALPERLYVLQKGKVVYK <---Intron---> GRPGPWHYCPQEVREFLEEL
        |/||/|||||//|||/||||/|||||||||||||||/|||||||||||||/|||||| <   1261bp   > |  |||/|||||||| ||||
Target  IQSHRTLQDRVRAAQVLLKERPLCPVVLDTMENLSSSKYAALPERLYVLQRGKVVYK                GGVGPWNYCPQEVREVLEEL
        acacaaccgcgcggcgctagccttcggtgaagataatatggccgactgccagaggta                ggggctattccggcggtggc
        tagagctaagtgccatttaagctgctttactaatggcaacctcagtattaggattaa                ggtgcgaagcaatgattaat
        catcatcattcgtaacaaagtcatagtgcggacgcctataataaatcgtaaagtctg                tagatgtttaaaatatgaga
                                                                                                     
 Sequence until next stop: 
ATTTAA
 I  * 

 Distance CDS-SECIS: 922 ; UGA-SECIS: 1285

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = CEMB01015858.1 Strand = + Positions = 103164 - 103235
 Found by:  Infernal (score=29.22) Covels (score=22.41)
 Stem2 length = 10   Apical loop length = 10   Insertion in stem2 = 0, 0
 Free Energy = -13.64

         ..(((((((.......(((((((((((((((...............)))))))))))))))..........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuu-u-uuucaugaccggc
         .((((((((.--....{[[{{((((((((((........-----..))))))))))}}]]}......-...)))))))).
 target  UCUGUAUUUC--UUUAUGACAGUCAUAGUUUAAAACAUG-----GAAGGCUAUGACCUGAUUUGGAA-AAAAAAUACAGU
                         ****           ^^^                       ****