genewise output Score 25.46 bits over entire alignment Scores as bits over a synchronous coding model Warning: The bits scores is not probablistically correct for single seqs See WWW help for more info SPP00000038_1.0 57 SVPLPARLRSSLPEFQAAPEAEPEP S P P +L +S+P A P+ +P+P SAPAPGKLPASVPSPAAQPQPQPQP NIVO01001699.1129273 tgcgcgaccgtgcacggcccccccc cccccgatccctcgcccacacacac tctccagtacagcctacgagggaga // >NIVO01001699.1:subseq(3461309,210250).pep SAPAPGKLPASVPSPAAQPQPQPQP // >NIVO01001699.1:subseq(3461309,210250).[129273:129347].sp TCTGCCCCTGCCCCCGGAAAGCTTCCAGCCTCAGTGCCCAGCCCTGCAGCCCAGCCACAG CCGCAGCCACAGCCA // NIVO01001699.1:subseq(3461309,210250) GeneWise match 129273 129347 25.46 + . NIVO01001699.1:subseq(3461309,210250)-genewise-prediction-1 NIVO01001699.1:subseq(3461309,210250) GeneWise cds 129273 129347 0.00 + 0 NIVO01001699.1:subseq(3461309,210250)-genewise-prediction-1 // genewise output Score 1145.47 bits over entire alignment Scores as bits over a synchronous coding model Warning: The bits scores is not probablistically correct for single seqs See WWW help for more info SPP00000038_1.0 1 MAGRRVNVNVGVLGHIDSGKTALARALSTTASTAAFDKQPQSRERGITL MAGRRVNVNVGVLGHIDSGKTALARALSTTASTAAFDKQPQSRERGITL MAGRRVNVNVGVLGHIDSGKTALARALSTTASTAAFDKQPQSRERGITL NIVO01001699.-160286 aggccgagagggcgcagagaagcgcgcaaagtaggtgacccacgcgaac tcgggtatatgttgataggacctcgctgccccccctaaacaggaggtct ggcgggcgcgccgccccccgggggcgcccgcccccccggggccgcccgc SPP00000038_1.0 50 DLGFSCFSVPLPARLRSSLPEFQAAPEAEPEPG-EPLLQVTLVDCPGHA DLGFSCFSVPLPA LR AP A+P PG EP LQVTLVDCPGHA DLGFSCFSVPLPAHLR-------PAPGAQPGPGPEPRLQVTLVDCPGHA NIVO01001699.-160139 gcgtttttgcccgccc cgcggccgcgcgccccgacggtcgcg atgtcgtctctccatg cccgcacgcgcacgtatcttagcgac cgccgcccgggcgcgg gggcggcgcgcgggggcggcccgccg SPP00000038_1.0 98 SLIRTIIG AQIIDLMMLVIDVTK SLIRTIIG AQIIDLMMLVIDVTK SLIRTIIG G:G[ggg] AQIIDLMMLVIDVTK NIVO01001699.-160013 tcacaaagGGTGAGCG Intron 1 CAGGGgcaagcaacgaggaa cttgcttg <1-----[159988:11475-1> cattattttttatca cccgcccc cgcctcgggcccacg SPP00000038_1.0 122 GMQTQSAECLVIGQIACQKLVVVLNKIDLLPEGKRQAAIDKMTKKMQKT GMQTQSAECLVIGQIACQKL+VVLNK DLLPEGKRQAAID+M KKMQ+T GMQTQSAECLVIGQIACQKLIVVLNKTDLLPEGKRQAAIDRMAKKMQRT NIVO01001699.-114702 gacactggtcgagcagtcacaggcaaagcccggaacggagaagaaacaa gtacaccagtttgatcgaatttttaacattcagagacctagtcaatagc gggcggcgccgcggcccgggcgggcgcccgcaggagggccggcgggggc SPP00000038_1.0 171 LENT FRGAPIIPVAAKPGGPEAP LENT FRGAP+IPVAAKPGGP+AP LENT K:K[aag] FRGAPVIPVAAKPGGPDAP NIVO01001699.-114555 cgaaAAGTAGGCC Intron 2 CAGGtcggcgacgggacggcggc taac <2-----[114541:10732-2> tggccttctccacggcacc ggcc cgcatcactgcgtgaacct SPP00000038_1.0 195 ETEAPQGIPELIE LLTSQISIPTRDP ETEAPQGIPELIE LL SQISIPTRDP ETEAPQGIPELIE LLVSQISIPTRDP NIVO01001699.-107267 gaggccgacgcagGTACGTC Intron 3 CAGccgtcatacaagc acaccagtcatta<0-----[107228:10644-0>tttcatctccgac agatggccggccg cggcgcccgggcc SPP00000038_1.0 221 SGPFLMSVDHCFSIKGQGTVMTGTILSGSISLGDSVEIPALK SGPFLMSVDHCFSIKGQGTVMTGTILSGS+SLGDSVEIPALK SGPFLMSVDHCFSIKGQGTVMTGTILSGSVSLGDSVEIPALK NIVO01001699.-106402 tgctcatggctttaagcgagaagaactgtgacggaggacgca cgctttctaagtctagagcttcgcttcgctgtgagtatccta gggccgcgccccccacgccggggcccgccccccccggcgccg SPP00000038_1.0 263 VVKKVKSMQMFHMPITSAMQGDRLGI VV+KVKSMQMFH P++SA+QGDRLGI VVRKVKSMQMFHTPVSSAVQGDRLGI NIVO01001699.-106276 GTCAGTC Intron 4 CAGggaagatacatcacgatggcggccga <0-----[106276:68452-0>ttgatactattacctgcctagagtgt gggaggcgagccgccccggggcgccc SPP00000038_1.0 289 CVTQFDPKLLERGLVCAPESLHTVHAALISVEKIPYFRGPLQTKAKFHI CVTQFDPKLLERGLVCAPESLHTVHAALISVEKIPYFRGPLQTKAKFHI CVTQFDPKLLERGLVCAPESLHTVHAALISVEKIPYFRGPLQTKAKFHI NIVO01001699.1-68373 tgactgcaccgcgcgtgcgtccagcggcatggaacttcgcccaagatca gtcatacattaggttgccactactaccttctaatcatggctacacatat cccgcccggggccgacccgcgcgccgccccgggccccggcggcgcgccc SPP00000038_1.0 338 TVGHETVMGRLMFFSPAPDNFDQEPILDSFNFSQEYLFQEQYLSKDLTP TVGHETVMGR+MFFSPAPD++D+EP+LDSF+FS+EYLFQEQYL P TVGHETVMGRVMFFSPAPDSLDREPVLDSFDFSREYLFQEQYLCPGPAP NIVO01001699.1-68226 aggcgagagcgattacgcgacgcgcgcgttgttcgtctcgctctcgcgc ctgaacttggttttgcccagtagacttactatcgaattaaaatgcgccc cgccggcgcgggcccccccccccgcgccccccccgcccgggcgcgcgcg SPP00000038_1.0 387 AVTDNDEADKKAGQATEGHCPRQQWALVEFEKPVTCPRLCLVIGSRLDA A D EA +KAGQA+ G CPRQQWALVEFEKPVTCPRLCLVIGSRLDA AAADASEATEKAGQASAGRCPRQQWALVEFEKPVTCPRLCLVIGSRLDA NIVO01001699.1-68079 gggggtggagaggcgtggctcccctgcggtgacgatccctcgagtacgg cccaccaccaacgacccgggcgaagcttataactcgcgtgtttgcgtac tgccgtgccgggcgcgaccccggggcgggtggtcccgggcggcccgatc SPP00000038_1.0 436 DIHTNTCRLAFHGILLHGLEDRNYADSFLPRLKVYKLKHKHGLVER DIH NTCRLAFHG+LLHGL DR+YA+S LP L+VYKLK KHG+VER DIHANTCRLAFHGVLLHGLGDRDYAESTLPALRVYKLKQKHGVVER NIVO01001699.1-67932 gacgaatccgtcggcccgcggagtggaaccgccgtacacacggggc atacacggtctagtttagtgagaacagctcctgtaataaaagttag cccccgccgccctcggcggacgccggccgtggggcgggggcccggg SPP00000038_1.0 482 AMDDYSVIGRSLFKKETNIQLFVGLK +DD+SVIGRSLFKKETNIQLFVGL+ VLDDHSVIGRSLFKKETNIQLFVGLR NIVO01001699.1-67794 GTGAGCA Intron 5 CAGgcggcagagctctaagaaacctggca <0-----[67794:63715]-0>ttaaagttggcttaaacatatttgtg ggtcccgccccgcgggcccggcgacg SPP00000038_1.0 508 VHLSTGELGIIDSAFGQSGKFKIHIP VHLSTGELG+IDSAFGQSGKFK+HIP VHLSTGELGVIDSAFGQSGKFKVHIP G:G[ggt] NIVO01001699.1-63636 gcctaggcggagagtgcagatagcacGGTGAGTG Intron 6 tatccgatgttagctgaggatatatc <1-----[63557:50185] gcgtccggcccccctagccacgccct SPP00000038_1.0 534 GLSPESKKILTPALKKRARAGRGEATRQEESAERSEPSQHVVLS GLSPESKKILT ALKKR RAGRGEA + EE AER EP+Q V LS GLSPESKKILTSALKKRGRAGRGEAAKPEE-AERLEPAQPVGLS NIVO01001699.1-50187 CAGGTgcacgtaaacatgcaacgcggcggggacgg ggccgcgccggca -1> gtgcacaattccctaagggcgggaccacaa cagtaccactgtg cgccgcggcgacccgggctccgcgacgggg aggggtcgcgccc SPP00000038_1.0 579 LTFKRYVFDTHKRMVQSP L+FKRYVFD HKRMVQSP LSFKRYVFDAHKRMVQSP NIVO01001699.1-50053 cttactgtggcacagctc tctagattacaagttacc gccgcccccccgcgcgtc // Making a G in phase 1 intron Making a K in phase 2 intron Making a G in phase 1 intron >NIVO01001699.1:subseq(3461309,210250).pep MAGRRVNVNVGVLGHIDSGKTALARALSTTASTAAFDKQPQSRERGITLDLGFSCFSVPL PAHLRPAPGAQPGPGPEPRLQVTLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGMQTQ SAECLVIGQIACQKLIVVLNKTDLLPEGKRQAAIDRMAKKMQRTLENTKFRGAPVIPVAA KPGGPDAPETEAPQGIPELIELLVSQISIPTRDPSGPFLMSVDHCFSIKGQGTVMTGTIL SGSVSLGDSVEIPALKVVRKVKSMQMFHTPVSSAVQGDRLGICVTQFDPKLLERGLVCAP ESLHTVHAALISVEKIPYFRGPLQTKAKFHITVGHETVMGRVMFFSPAPDSLDREPVLDS FDFSREYLFQEQYLCPGPAPAAADASEATEKAGQASAGRCPRQQWALVEFEKPVTCPRLC LVIGSRLDADIHANTCRLAFHGVLLHGLGDRDYAESTLPALRVYKLKQKHGVVERVLDDH SVIGRSLFKKETNIQLFVGLRVHLSTGELGVIDSAFGQSGKFKVHIPGGLSPESKKILTS ALKKRGRAGRGEAAKPEEAERLEPAQPVGLSLSFKRYVFDAHKRMVQSP // >NIVO01001699.1:subseq(3461309,210250).[160286:49998].sp ATGGCGGGCCGGCGGGTGAACGTGAACGTGGGCGTCCTGGGCCACATCGACAGCGGCAAG ACGGCGCTGGCGCGCGCGCTCAGCACCACGGCCTCCACCGCCGCCTTCGACAAGCAGCCG CAGAGCCGCGAGCGCGGCATCACGCTCGACCTGGGCTTCTCGTGCTTCTCCGTGCCGCTG CCCGCGCACCTGCGGCCGGCGCCGGGCGCGCAGCCCGGGCCCGGGCCCGAGCCGCGGCTG CAGGTCACGCTGGTCGACTGCCCGGGCCACGCGTCCCTCATCCGGACCATCATCGGCGGG GCCCAGATCATCGATCTCATGATGCTGGTCATCGACGTAACCAAGGGGATGCAGACCCAG TCGGCCGAGTGCCTCGTGATCGGGCAGATCGCCTGCCAGAAGCTGATCGTGGTGCTGAAC AAGACCGACCTCCTGCCCGAAGGGAAGAGACAGGCGGCGATCGACAGGATGGCCAAGAAG ATGCAGAGGACCCTGGAGAACACCAAGTTCCGGGGCGCACCTGTCATACCCGTTGCGGCC AAGCCTGGGGGACCAGACGCCCCTGAAACGGAAGCTCCGCAGGGCATCCCGGAGCTCATC GAGCTCCTGGTGTCCCAGATCTCCATCCCGACGAGGGACCCCTCGGGGCCGTTCCTCATG TCCGTGGACCACTGCTTCTCCATCAAAGGCCAGGGCACCGTGATGACGGGGACCATCCTC TCGGGCTCCGTCAGCCTCGGCGACAGCGTGGAGATCCCGGCCCTCAAGGTGGTGAGGAAA GTGAAGTCCATGCAAATGTTCCACACGCCCGTCAGCTCCGCGGTGCAGGGGGACCGGCTC GGCATCTGCGTCACCCAGTTCGACCCCAAGCTGCTGGAGCGCGGCCTGGTATGCGCCCCC GAGTCCCTGCACACGGTCCACGCGGCCCTCATCTCCGTGGAGAAGATCCCCTACTTCCGG GGGCCCCTGCAGACCAAGGCCAAGTTCCACATCACCGTGGGCCACGAGACGGTCATGGGC CGGGTGATGTTCTTCAGCCCCGCCCCCGACAGCCTCGACCGCGAGCCCGTGCTCGACTCC TTCGACTTCTCCCGCGAGTACCTCTTCCAGGAGCAGTACCTGTGCCCGGGCCCGGCCCCG GCTGCGGCCGACGCGTCTGAGGCCACCGAGAAGGCGGGCCAGGCCTCGGCAGGCCGCTGC CCCCGGCAGCAGTGGGCCCTGGTGGAGTTTGAGAAGCCTGTCACCTGCCCGCGGCTGTGC CTGGTGATCGGCTCCAGGCTAGATGCCGACATCCACGCCAACACGTGCCGCCTGGCCTTC CACGGTGTCCTGCTGCACGGGCTGGGAGACAGGGACTACGCGGAGAGCACCCTGCCTGCG CTGCGGGTGTACAAGCTGAAGCAGAAGCACGGCGTCGTGGAGCGGGTGCTGGATGACCAC AGCGTGATCGGCCGCTCCCTGTTCAAGAAGGAGACCAACATCCAGCTGTTCGTGGGACTC AGGGTGCACCTGTCTACCGGCGAGCTGGGCGTCATCGACAGCGCCTTTGGACAGAGCGGC AAATTCAAGGTCCACATCCCTGGTGGCCTGAGCCCCGAGTCCAAGAAGATCCTGACATCC GCCCTCAAGAAGCGGGGCCGTGCCGGCCGGGGCGAGGCAGCCAAGCCGGAGGAGGCAGAG CGGCTGGAGCCTGCCCAGCCCGTGGGCCTCAGCCTGTCCTTCAAGCGCTACGTCTTCGAC GCCCACAAGCGCATGGTCCAGTCTCCC // NIVO01001699.1:subseq(3461309,210250) GeneWise match 160286 50000 1151.46 - . NIVO01001699.1:subseq(3461309,210250)-genewise-prediction-1 NIVO01001699.1:subseq(3461309,210250) GeneWise cds 160286 159989 0.00 - 0 NIVO01001699.1:subseq(3461309,210250)-genewise-prediction-1 NIVO01001699.1:subseq(3461309,210250) GeneWise intron 159988 114750 0.00 - . NIVO01001699.1:subseq(3461309,210250)-genewise-prediction-1 NIVO01001699.1:subseq(3461309,210250) GeneWise cds 114749 114542 0.00 - 2 NIVO01001699.1:subseq(3461309,210250)-genewise-prediction-1 NIVO01001699.1:subseq(3461309,210250) GeneWise intron 114541 107326 0.00 - . NIVO01001699.1:subseq(3461309,210250)-genewise-prediction-1 NIVO01001699.1:subseq(3461309,210250) GeneWise cds 107325 107229 0.00 - 1 NIVO01001699.1:subseq(3461309,210250)-genewise-prediction-1 NIVO01001699.1:subseq(3461309,210250) GeneWise intron 107228 106442 0.00 - . NIVO01001699.1:subseq(3461309,210250)-genewise-prediction-1 NIVO01001699.1:subseq(3461309,210250) GeneWise cds 106441 106277 0.00 - 0 NIVO01001699.1:subseq(3461309,210250)-genewise-prediction-1 NIVO01001699.1:subseq(3461309,210250) GeneWise intron 106276 68452 0.00 - . NIVO01001699.1:subseq(3461309,210250)-genewise-prediction-1 NIVO01001699.1:subseq(3461309,210250) GeneWise cds 68451 67795 0.00 - 0 NIVO01001699.1:subseq(3461309,210250)-genewise-prediction-1 NIVO01001699.1:subseq(3461309,210250) GeneWise intron 67794 63715 0.00 - . NIVO01001699.1:subseq(3461309,210250)-genewise-prediction-1 NIVO01001699.1:subseq(3461309,210250) GeneWise cds 63714 63558 0.00 - 0 NIVO01001699.1:subseq(3461309,210250)-genewise-prediction-1 NIVO01001699.1:subseq(3461309,210250) GeneWise intron 63557 50185 0.00 - . NIVO01001699.1:subseq(3461309,210250)-genewise-prediction-1 NIVO01001699.1:subseq(3461309,210250) GeneWise cds 50184 50000 0.00 - 2 NIVO01001699.1:subseq(3461309,210250)-genewise-prediction-1 //