genewise output Score 1055.17 bits over entire alignment Scores as bits over a synchronous coding model Warning: The bits scores is not probablistically correct for single seqs See WWW help for more info SPP00000281_2.0 1 SLQVKELFSSLGVDCNILELDQV SLQVKELFSSLGVDCNILELDQ SLQVKELFSSLGVDCNILELDQA D:D[gat] NIVO01001699.1:50000 ttcgagctttcgggtaatgcgcgGGTGAGTA Intron 1 TAGAT ctataattcctgtagattataac <1-----[50070:50967]-1> aggtaactttgatctccgattat SPP00000281_2.0 25 EGASVQEALSEITSQRTVPSVFVNRVHVGGCDHTFQ EGASVQE LSE+T+QRTVPS+FVNRVHVGGCDHTFQ EGASVQEVLSEMTNQRTVPSIFVNRVHVGGCDHTFQ NIVO01001699.1:50970 gggagcggctgaaacaagcaatgaagcgggtgcatc agcgtaattcatcaagctcgtttagtatgggaacta ggctcggtaaggccggtgccctgtagcgcttcctcg SPP00000281_2.0 61 AHQSGLLQQLLQQDPAYDYDLIVIGG AHQSGLLQQLLQQD AYDYDLIVIGG AHQSGLLQQLLQQDLAYDYDLIVIGG NIVO01001699.1:51078 GTAAATA Intron 2 CAGgccagttccccccgcgtgtgcagagg <0-----[51078:53730]-0>caaggttaattaaatcaaaattttgg atgttaaggccggcggcccccccccg SPP00000281_2.0 87 GSGGLSCAQ EAAVLGRKVMVLDFVVP GSGGLSCAQ EAAVLGRKVMVLDFVVP GSGGLSCAQ EAAVLGRKVMVLDFVVP NIVO01001699.1:53809 gtggcttgcGTGAGAA Intron 3 CAGggggcgaagagcgtggc gcggtcgca<0-----[53836:54048]-0>accttggattttatttc ccgccgctg acccggggcgtgccgca SPP00000281_2.0 113 SPRGTAW LGGTCVNVGCIPKKLM SPRGTAW LGGTCVNVGCIPKKLM SPRGTAW G:G[ggt] LGGTCVNVGCIPKKLM NIVO01001699.1:54100 tccgagtGGTGAGCG Intron 4 CAGGTcggatgaggtacaaca ccggccg <1-----[54122:55015]-1> tggcgtatggtcaatt ccccgcg ttcgtgttctcggggg SPP00000281_2.0 137 HQAALLGQALTDSRKFGWEYSQQ HQAALLGQALTDSRKFGWEYSQQ HQAALLGQALTDSRKFGWEYSQQ V:V[gtg] NIVO01001699.1:55066 ccggccgcgcagtaatgtgtaccGGTGGGTG Intron 5 CAGTG aaccttgactcacgatggaagaa <1-----[55136:57279]-1> cgtggaggggcccggccggctga SPP00000281_2.0 161 RHSWATMTEAIQSHIGSLSWGHRLALREKAVTYVNSFGEFVEHHKVK RHSWATMTEAIQSH+GSLSWG RLALRE AVTYVNS+GEFVEHHKVK RHSWATMTEAIQSHVGSLSWGRRLALRENAVTYVNSYGEFVEHHKVK NIVO01001699.1:57282 acatgaaaggacacggtcatgcccgccgaggatgattggtggccaga gaggcctcactagatgctgggggtctgaactcatacagattaaaata gccgctgggccgccccggcgccggcgggcagccccccggttgccacg SPP00000281_2.0 208 ATNEKGQEVLYTAAKFVIATGERPRY ATNEKGQE LYTAAKFVIATG+RPRY ATNEKGQEALYTAAKFVIATGQRPRY NIVO01001699.1:57423 GTCAGTC Intron 6 AAGgaagagcggctaggatgagagcacct <0-----[57423:57590]-0>ccaaagaactacccatttccgagcga actgaagggtcttggtccgaagggcc SPP00000281_2.0 234 LGIPGDREYCIT DDLFSLPYCPG LGIPGDREYCIT DDLFSLPYCPG LGIPGDREYCIT S:S[agc] DDLFSLPYCPG NIVO01001699.1:57669 tgacggagttaaAGGTGGGGA Intron 7 CAGCggcttccttcg tgtcgagaagtc <2-----[57707:58305]-2> aattctcagcg gacgacagcccc ccgcggcccgc SPP00000281_2.0 258 ATLVVGASYVALECAGFLAGLGLEVTVMVRSVLLRGFDQEMAEKVGASM TLVVGASYVALECAGFLAGLGLEVTVMVRSVLLRGFDQEMAEKVGA + TTLVVGASYVALECAGFLAGLGLEVTVMVRSVLLRGFDQEMAEKVGACL NIVO01001699.1:58340 aacggggttggcgtggtcggcgcggagagctgcccgtgcgaggagggtc cctttgccatctagcgttcgtgtatctttgctttggtaaatcaatgcgt gcgggcgccggggtaccgccgcggcacggcggcggcccgggcgggcccg SPP00000281_2.0 307 QQLGVRFLRKFVPVE VQQLERGLPGR QQLGVRFLRKFVPVE VQQLE+GLPGR QQLGVRFLRKFVPVE VQQLEKGLPGR NIVO01001699.1:58487 cccggctccatgcggGTGAGTC Intron 8 CAGgcccgagccga aatgtgttgattcta<0-----[58532:59219]-0>taataagtcgg ggccgccgcgcgcgg cgggggcgcgg SPP00000281_2.0 333 LKVVAKSTEGTETIEGIYNT VLLAIG LKVVAKSTEGTET+EG+YNT VLLAIG LKVVAKSTEGTETMEGVYNT VLLAIG NIVO01001699.1:59253 cagggataggagaagggtaaGTGAGCA Intron 9 CAGgttgag tattcaccagcactagtaac<0-----[59313:65793]-0>tttctg ggcgtacgagagaggctccg tgaatt SPP00000281_2.0 359 RDSCTKKLGLEKIGVNVSE TGKI RDSCTKKLGLEKIGVN+SE TGKI RDSCTKKLGLEKIGVNISE K:K[aag] TGKI NIVO01001699.1:65812 cgttaaatgcgaaggaaagAAGTAAGTA Intron 10 CAGGagaa gacgcaatgtaatgtatga <2-----[65871:66605]-2> cgat tcccgggaggggttgtctg gcgc SPP00000281_2.0 383 PVNDEEQTSVSYVYAVGDVLEGKPQLTPVAVQAGKLLARRLFGGRSEK PVN EEQTSV YVYAVGDVLEGKPQLTPVAV+AGKLLARRLFGGRSEK PVNGEEQTSVPYVYAVGDVLEGKPQLTPVAVRAGKLLARRLFGGRSEK NIVO01001699.1:66619 cgagggcaagctgtgggggcggacccacgggcggaccgcactggctga ctagaaacgtcatactgattagacatcctctgcgattcggttgggcaa aatcgggctgctcctcgccggcgggccgccgggcggggagttgcaagg SPP00000281_2.0 431 CDYVNVPTVVFTPLEYGCCGYSEEKA CDYVNVPTVVFTPLEYGCCGYSEEKA CDYVNVPTVVFTPLEYGCCGYSEEKA NIVO01001699.1:66763 GTAAGTT Intron 11 CAGtgtgagcaggtactgtgttgttggag <0-----[66763:67374]-0>gaatatcctttcctaaggggacaaac tcccccccggcgcggccctgcagggt SPP00000281_2.0 457 GEVYQAENLN VYHTLFWPLEWTVAGR GEV QAENL VYHTLFWPLEWTVA R GEVCQAENLG VYHTLFWPLEWTVACR NIVO01001699.1:67453 gggtcggacgGTAAGCT Intron 12 CAGgtcacttccgtaggta gatgacaatg<0-----[67483:72109]-0>taacttgctagctcgg cggcgggtgt ccccgcgtcggagcca SPP00000281_2.0 483 DNNTCYAKIICNKLDN DRVIGFHVLG DNNTCYAKIICNKLDN DRVIGFHVLG DNNTCYAKIICNKLDN DRVIGFHVLG NIVO01001699.1:72158 gaaattgaaataacgaGTACGTC Intron 13 AAGgcgagtcgcg aaacgacattgaataa<0-----[72206:75850]-0>agttgtattg ccctccggacctagcc tggaatccca SPP00000281_2.0 509 PNAGEITQGFAAAMKCGLTKQLLDDTIGIHPTCGE PNAGEITQGFAAAMKCGLTKQLLD TIGIHPTCGE PNAGEITQGFAAAMKCGLTKQLLDATIGIHPTCGE NIVO01001699.1:75881 cagggaacgtgggaatgcaacccggaagaccatgg cacgatcagtccctaggtcaattacctgtaccgga gccggctggtctcggtgcaggggtcccgcccgtag SPP00000281_2.0 544 VFTTLEITKASGLDITQKGC VFTTLEITKASGLDITQKGC VFTTLEITKASGLDITQKGC NIVO01001699.1:75986 GTGCGCC Intron 14 CAGgtaatgaaagtgcgaacagt <0-----[75986:76124]-0>ttcctatcaccgtatcaagg gcccggccgggagccgggcc // Making a D in phase 1 intron Making a G in phase 1 intron Making a V in phase 1 intron Making a S in phase 2 intron Making a K in phase 2 intron >NIVO01001699.1:subseq(4490624,126190).pep SLQVKELFSSLGVDCNILELDQADEGASVQEVLSEMTNQRTVPSIFVNRVHVGGCDHTFQ AHQSGLLQQLLQQDLAYDYDLIVIGGGSGGLSCAQEAAVLGRKVMVLDFVVPSPRGTAWG LGGTCVNVGCIPKKLMHQAALLGQALTDSRKFGWEYSQQVRHSWATMTEAIQSHVGSLSW GRRLALRENAVTYVNSYGEFVEHHKVKATNEKGQEALYTAAKFVIATGQRPRYLGIPGDR EYCITSDDLFSLPYCPGTTLVVGASYVALECAGFLAGLGLEVTVMVRSVLLRGFDQEMAE KVGACLQQLGVRFLRKFVPVEVQQLEKGLPGRLKVVAKSTEGTETMEGVYNTVLLAIGRD SCTKKLGLEKIGVNISEKTGKIPVNGEEQTSVPYVYAVGDVLEGKPQLTPVAVRAGKLLA RRLFGGRSEKCDYVNVPTVVFTPLEYGCCGYSEEKAGEVCQAENLGVYHTLFWPLEWTVA CRDNNTCYAKIICNKLDNDRVIGFHVLGPNAGEITQGFAAAMKCGLTKQLLDATIGIHPT CGEVFTTLEITKASGLDITQKGC // >NIVO01001699.1:subseq(4490624,126190).[50000:76184].sp TCATTGCAGGTTAAAGAACTCTTTTCTTCTCTGGGAGTTGACTGTAACATCTTGGAACTT GATCAAGCTGATGAGGGGGCCAGTGTCCAGGAGGTTCTATCAGAGATGACCAACCAGAGG ACTGTGCCCAGCATCTTTGTGAATAGAGTGCACGTGGGCGGTTGTGACCACACTTTCCAG GCACATCAGAGTGGTTTATTACAGCAGCTCCTCCAGCAGGACCTGGCGTACGACTACGAC CTCATCGTCATCGGCGGGGGCTCCGGGGGCCTCTCGTGCGCTCAGGAAGCCGCCGTCCTG GGGAGGAAGGTCATGGTTCTGGACTTCGTGGTCCCATCCCCCCGCGGCACGGCCTGGGGT CTTGGTGGCACGTGTGTGAATGTTGGCTGTATCCCGAAGAAGCTGATGCACCAGGCTGCG CTGCTAGGGCAGGCGCTGACCGACTCCAGGAAGTTCGGCTGGGAGTACAGTCAGCAAGTG AGGCACAGCTGGGCCACTATGACGGAGGCCATCCAGAGCCACGTCGGCTCGCTGAGCTGG GGCCGCCGGCTGGCCCTGCGGGAGAACGCAGTGACCTACGTCAACTCCTACGGGGAGTTT GTTGAGCACCACAAAGTCAAGGCAACCAATGAGAAAGGACAGGAGGCGCTTTACACTGCT GCGAAGTTTGTCATCGCGACAGGACAGAGGCCGCGCTACTTGGGAATCCCGGGAGACAGA GAGTACTGCATCACCAGCGACGACCTGTTCTCGCTGCCCTACTGCCCGGGCACGACCCTG GTGGTGGGCGCGTCCTACGTGGCGCTGGAGTGTGCAGGCTTCCTGGCCGGCCTGGGCCTG GAGGTCACAGTCATGGTGCGCTCGGTGCTCCTGCGGGGCTTCGACCAGGAGATGGCCGAG AAGGTGGGCGCCTGCCTGCAGCAGCTCGGCGTGCGCTTCCTGCGCAAGTTCGTGCCCGTG GAGGTCCAGCAGCTGGAGAAGGGCCTGCCCGGGAGGCTGAAGGTCGTGGCTAAATCCACG GAAGGGACAGAGACAATGGAGGGCGTTTACAACACGGTTTTGTTAGCAATTGGTCGTGAC TCCTGCACGAAGAAGTTAGGGCTGGAGAAGATTGGTGTGAATATCAGTGAGAAGACGGGC AAGATCCCAGTAAATGGCGAGGAGCAGACCAGTGTGCCCTATGTCTACGCTGTCGGGGAC GTCCTGGAGGGCAAGCCGCAGCTCACCCCGGTCGCCGTGCGGGCGGGCAAGCTGCTGGCG CGAAGGCTTTTTGGGGGCCGATCAGAGAAGTGTGACTACGTCAACGTCCCCACCGTGGTG TTCACGCCCTTGGAGTACGGCTGCTGTGGGTACTCAGAGGAGAAGGCTGGCGAGGTGTGC CAGGCGGAGAATCTGGGTGTCTACCACACCCTGTTCTGGCCTCTCGAGTGGACAGTGGCC TGCAGAGACAACAACACTTGCTACGCGAAGATAATCTGCAATAAACTGGACAACGATCGG GTGATAGGATTTCACGTCCTCGGACCGAACGCCGGGGAGATCACTCAGGGGTTTGCCGCT GCCATGAAGTGTGGGCTCACAAAGCAGCTGCTGGATGCCACCATCGGGATCCACCCCACG TGTGGAGAGGTGTTCACCACCTTGGAGATCACCAAGGCGTCGGGACTGGACATCACGCAG AAGGGCTGC // NIVO01001699.1:subseq(4490624,126190) GeneWise match 50000 76184 1055.17 + . NIVO01001699.1:subseq(4490624,126190)-genewise-prediction-1 NIVO01001699.1:subseq(4490624,126190) GeneWise cds 50000 50069 0.00 + 0 NIVO01001699.1:subseq(4490624,126190)-genewise-prediction-1 NIVO01001699.1:subseq(4490624,126190) GeneWise intron 50070 50967 0.00 + . NIVO01001699.1:subseq(4490624,126190)-genewise-prediction-1 NIVO01001699.1:subseq(4490624,126190) GeneWise cds 50968 51077 0.00 + 2 NIVO01001699.1:subseq(4490624,126190)-genewise-prediction-1 NIVO01001699.1:subseq(4490624,126190) GeneWise intron 51078 53730 0.00 + . NIVO01001699.1:subseq(4490624,126190)-genewise-prediction-1 NIVO01001699.1:subseq(4490624,126190) GeneWise cds 53731 53835 0.00 + 0 NIVO01001699.1:subseq(4490624,126190)-genewise-prediction-1 NIVO01001699.1:subseq(4490624,126190) GeneWise intron 53836 54048 0.00 + . NIVO01001699.1:subseq(4490624,126190)-genewise-prediction-1 NIVO01001699.1:subseq(4490624,126190) GeneWise cds 54049 54121 0.00 + 0 NIVO01001699.1:subseq(4490624,126190)-genewise-prediction-1 NIVO01001699.1:subseq(4490624,126190) GeneWise intron 54122 55015 0.00 + . NIVO01001699.1:subseq(4490624,126190)-genewise-prediction-1 NIVO01001699.1:subseq(4490624,126190) GeneWise cds 55016 55135 0.00 + 2 NIVO01001699.1:subseq(4490624,126190)-genewise-prediction-1 NIVO01001699.1:subseq(4490624,126190) GeneWise intron 55136 57279 0.00 + . NIVO01001699.1:subseq(4490624,126190)-genewise-prediction-1 NIVO01001699.1:subseq(4490624,126190) GeneWise cds 57280 57422 0.00 + 2 NIVO01001699.1:subseq(4490624,126190)-genewise-prediction-1 NIVO01001699.1:subseq(4490624,126190) GeneWise intron 57423 57590 0.00 + . NIVO01001699.1:subseq(4490624,126190)-genewise-prediction-1 NIVO01001699.1:subseq(4490624,126190) GeneWise cds 57591 57706 0.00 + 0 NIVO01001699.1:subseq(4490624,126190)-genewise-prediction-1 NIVO01001699.1:subseq(4490624,126190) GeneWise intron 57707 58305 0.00 + . NIVO01001699.1:subseq(4490624,126190)-genewise-prediction-1 NIVO01001699.1:subseq(4490624,126190) GeneWise cds 58306 58531 0.00 + 1 NIVO01001699.1:subseq(4490624,126190)-genewise-prediction-1 NIVO01001699.1:subseq(4490624,126190) GeneWise intron 58532 59219 0.00 + . NIVO01001699.1:subseq(4490624,126190)-genewise-prediction-1 NIVO01001699.1:subseq(4490624,126190) GeneWise cds 59220 59312 0.00 + 0 NIVO01001699.1:subseq(4490624,126190)-genewise-prediction-1 NIVO01001699.1:subseq(4490624,126190) GeneWise intron 59313 65793 0.00 + . NIVO01001699.1:subseq(4490624,126190)-genewise-prediction-1 NIVO01001699.1:subseq(4490624,126190) GeneWise cds 65794 65870 0.00 + 0 NIVO01001699.1:subseq(4490624,126190)-genewise-prediction-1 NIVO01001699.1:subseq(4490624,126190) GeneWise intron 65871 66605 0.00 + . NIVO01001699.1:subseq(4490624,126190)-genewise-prediction-1 NIVO01001699.1:subseq(4490624,126190) GeneWise cds 66606 66762 0.00 + 1 NIVO01001699.1:subseq(4490624,126190)-genewise-prediction-1 NIVO01001699.1:subseq(4490624,126190) GeneWise intron 66763 67374 0.00 + . NIVO01001699.1:subseq(4490624,126190)-genewise-prediction-1 NIVO01001699.1:subseq(4490624,126190) GeneWise cds 67375 67482 0.00 + 0 NIVO01001699.1:subseq(4490624,126190)-genewise-prediction-1 NIVO01001699.1:subseq(4490624,126190) GeneWise intron 67483 72109 0.00 + . NIVO01001699.1:subseq(4490624,126190)-genewise-prediction-1 NIVO01001699.1:subseq(4490624,126190) GeneWise cds 72110 72205 0.00 + 0 NIVO01001699.1:subseq(4490624,126190)-genewise-prediction-1 NIVO01001699.1:subseq(4490624,126190) GeneWise intron 72206 75850 0.00 + . NIVO01001699.1:subseq(4490624,126190)-genewise-prediction-1 NIVO01001699.1:subseq(4490624,126190) GeneWise cds 75851 75985 0.00 + 0 NIVO01001699.1:subseq(4490624,126190)-genewise-prediction-1 NIVO01001699.1:subseq(4490624,126190) GeneWise intron 75986 76124 0.00 + . NIVO01001699.1:subseq(4490624,126190)-genewise-prediction-1 NIVO01001699.1:subseq(4490624,126190) GeneWise cds 76125 76184 0.00 + 0 NIVO01001699.1:subseq(4490624,126190)-genewise-prediction-1 // genewise output Score 21.55 bits over entire alignment Scores as bits over a synchronous coding model Warning: The bits scores is not probablistically correct for single seqs See WWW help for more info SPP00000281_2.0 105 MVLDFVVPSPRGTAWGLGGTCVNVG-CIPKKLM +V + SPRG++ GTCV+ G C+ +L+ IVEQVTISSPRGSSLSGDGTCVSCGSCVAGRLF NIVO01001699.1-31376 aggcgaattcagttctgggatgttgttgggact ttaatctcccggcctcgagcgtcggcgtcggtt aggatctcccgatcttgtacccctccctacact // >NIVO01001699.1:subseq(4490624,126190).pep IVEQVTISSPRGSSLSGDGTCVSCGSCVAGRLF // >NIVO01001699.1:subseq(4490624,126190).[31376:31276].sp ATAGTGGAGCAAGTTACCATTTCCTCCCCCAGGGGATCTTCCCTTTCTGGGGATGGAACC TGCGTCTCCTGTGGCTCCTGCGTTGCAGGCAGACTCTTT // NIVO01001699.1:subseq(4490624,126190) GeneWise match 31376 31278 21.55 - . NIVO01001699.1:subseq(4490624,126190)-genewise-prediction-1 NIVO01001699.1:subseq(4490624,126190) GeneWise cds 31376 31278 0.00 - 0 NIVO01001699.1:subseq(4490624,126190)-genewise-prediction-1 //