Command line: [exonerate -m p2g --showtargetgff -q ../TXNRD3-human.fa -t TXNRD3-NIVO01001699.1.subseq] Hostname: [sitdoc] C4 Alignment: ------------ Query: SPP00000281_2.0 # Protein # Thioredoxin reductase 3 (TXNRD3) # Cow Target: NIVO01001699.1:subseq(4490624,126190) Ammotragus lervia isolate NAZ scaffold1294_len4820224_cov71, whole genome shotgun sequence Model: protein2genome:local Raw score: 2721 Query range: 0 -> 565 Target range: 49999 -> 76190 1 : SerLeuGlnValLysGluLeuPheSerSerLeuGlyValAspCysAsnIleLeuGluLeu : 20 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| SerLeuGlnValLysGluLeuPheSerSerLeuGlyValAspCysAsnIleLeuGluLeu 50000 : TCATTGCAGGTTAAAGaactcttttcttctctgggagTTGACTGTAACATCTTGGAACTT : 50057 21 : AspGlnVal{A} >>>> Target Intron 1 >>>> {sp}GluGlyAlaSerVal : 29 ||||||!.!{|} 898 bp {||}||||||||||||||| AspGlnAla{A}++ ++{sp}GluGlyAlaSerVal 50058 : GATCAAGCT{G}gt.........................ag{AT}GAGGGGGCCAGTGTC : 50982 30 : GlnGluAlaLeuSerGluIleThrSerGlnArgThrValProSerValPheValAsnArg : 49 ||||||!.!|||||||||!!:|||!:!||||||||||||||||||:!!|||||||||||| GlnGluValLeuSerGluMetThrAsnGlnArgThrValProSerIlePheValAsnArg 50983 : CAGGAGGTTCTATCAGAGATGACCAACCAGAGGACTGTGCCCAGCATCTTTGTGAATAGA : 51042 50 : ValHisValGlyGlyCysAspHisThrPheGln >>>> Target Intron 2 >>>> : 61 ||||||||||||||||||||||||||||||||| 2653 bp ValHisValGlyGlyCysAspHisThrPheGln++ 51043 : GTGCACGTGGGCGGTTGTGACCACACTTTCCAGgt......................... : 51080 62 : AlaHisGlnSerGlyLeuLeuGlnGlnLeuLeuGlnGlnAspProAlaTyrAspTyrA : 80 ||||||||||||||||||||||||||||||||||||||||||! !||||||||||||| ++AlaHisGlnSerGlyLeuLeuGlnGlnLeuLeuGlnGlnAspLeuAlaTyrAspTyrA 51081 : agGCACATCAGAGTGGTTTATTACAGCAGCTCCTCCAGCAGGACCTGGCGTACGACTACG : 53788 81 : spLeuIleValIleGlyGlyGlySerGlyGlyLeuSerCysAlaGln >>>> Target : 96 ||||||||||||||||||||||||||||||||||||||||||||||| 2 spLeuIleValIleGlyGlyGlySerGlyGlyLeuSerCysAlaGln++ 53789 : ACCTCATCGTCATCGGCGGGGGCTCCGGGGGCCTCTCGTGCGCTCAGgt........... : 53838 97 : Intron 3 >>>> GluAlaAlaValLeuGlyArgLysValMetValLeuAspPheVa : 110 13 bp |||||||||||||||||||||||||||||||||||||||||||| ++GluAlaAlaValLeuGlyArgLysValMetValLeuAspPheVa 53839 : ..............agGAAGCCGCCGTCCTGGGGAGGAAGGTCATGGTTCTGGACTTCGT : 54091 111 : lValProSerProArgGlyThrAlaTrp{G} >>>> Target Intron 4 >>>> : 120 ||||||||||||||||||||||||||||{|} 894 bp lValProSerProArgGlyThrAlaTrp{G}++ ++ 54092 : GGTCCCATCCCCCCGCGGCACGGCCTGG{G}gt.........................ag : 55014 121 : {ly}LeuGlyGlyThrCysValAsnValGlyCysIleProLysLysLeuMetHisGlnAl : 139 {||}|||||||||||||||||||||||||||||||||||||||||||||||||||||||| {ly}LeuGlyGlyThrCysValAsnValGlyCysIleProLysLysLeuMetHisGlnAl 55015 : {GT}CTTGGTGGCACGTGTGTGAATGTTGGCTGTATCCCGAAGAAGCTGATGCACCAGGC : 55072 140 : aAlaLeuLeuGlyGlnAlaLeuThrAspSerArgLysPheGlyTrpGluTyrSerGlnGl : 159 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| aAlaLeuLeuGlyGlnAlaLeuThrAspSerArgLysPheGlyTrpGluTyrSerGlnGl 55073 : TGCGCTGCTAGGGCAGGCGCTGACCGACTCCAGGAAGTTCGGCTGGGAGTACAGTCAGCA : 55132 160 : n{V} >>>> Target Intron 5 >>>> {al}ArgHisSerTrpAlaThrMetTh : 168 |{|} 2144 bp {||}||||||||||||||||||||||| n{V}++ ++{al}ArgHisSerTrpAlaThrMetTh 55133 : A{G}gt.........................ag{TG}AGGCACAGCTGGGCCACTATGAC : 57303 169 : rGluAlaIleGlnSerHisIleGlySerLeuSerTrpGlyHisArgLeuAlaLeuArgGl : 188 |||||||||||||||||||:!!||||||||||||||||||!.!||||||||||||||||| rGluAlaIleGlnSerHisValGlySerLeuSerTrpGlyArgArgLeuAlaLeuArgGl 57304 : GGAGGCCATCCAGAGCCACGTCGGCTCGCTGAGCTGGGGCCGCCGGCTGGCCCTGCGGGA : 57363 189 : uLysAlaValThrTyrValAsnSerPheGlyGluPheValGluHisHisLysValLys : 208 |!!.|||||||||||||||||||||!:!|||||||||||||||||||||||||||||| uAsnAlaValThrTyrValAsnSerTyrGlyGluPheValGluHisHisLysValLys++ 57364 : GAACGCAGTGACCTACGTCAACTCCTACGGGGAGTTTGTTGAGCACCACAAAGTCAAGgt : 57423 209 : >>>> Target Intron 6 >>>> AlaThrAsnGluLysGlyGlnGluValLeuTyr : 218 168 bp ||||||||||||||||||||||||!.!|||||| ++AlaThrAsnGluLysGlyGlnGluAlaLeuTyr 57424 : .........................agGCAACCAATGAGAAAGGACAGGAGGCGCTTTAC : 57621 219 : ThrAlaAlaLysPheValIleAlaThrGlyGluArgProArgTyrLeuGlyIleProGly : 238 ||||||||||||||||||||||||||||||:!!||||||||||||||||||||||||||| ThrAlaAlaLysPheValIleAlaThrGlyGlnArgProArgTyrLeuGlyIleProGly 57622 : ACTGCTGCGAAGTTTGTCATCGCGACAGGACAGAGGCCGCGCTACTTGGGAATCCCGGGA : 57681 239 : AspArgGluTyrCysIleThr{Se} >>>> Target Intron 7 >>>> {r}Asp : 247 |||||||||||||||||||||{||} 599 bp {|}||| AspArgGluTyrCysIleThr{Se}++ ++{r}Asp 57682 : GACAGAGAGTACTGCATCACC{AG}gt.........................ag{C}GAC : 58307 248 : AspLeuPheSerLeuProTyrCysProGlyAlaThrLeuValValGlyAlaSerTyrVal : 267 ||||||||||||||||||||||||||||||.!!||||||||||||||||||||||||||| AspLeuPheSerLeuProTyrCysProGlyThrThrLeuValValGlyAlaSerTyrVal 58308 : GACCTGTTCTCGCTGCCCTACTGCCCGGGCACGACCCTGGTGGTGGGCGCGTCCTACGTG : 58367 268 : AlaLeuGluCysAlaGlyPheLeuAlaGlyLeuGlyLeuGluValThrValMetValArg : 287 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| AlaLeuGluCysAlaGlyPheLeuAlaGlyLeuGlyLeuGluValThrValMetValArg 58368 : GCGCTGGAGTGTGCAGGCTTCCTGGCCGGCCTGGGCCTGGAGGTCACAGTCATGGTGCGC : 58427 288 : SerValLeuLeuArgGlyPheAspGlnGluMetAlaGluLysValGlyAlaSerMetGln : 307 |||||||||||||||||||||||||||||||||||||||||||||||||||!!!:!!||| SerValLeuLeuArgGlyPheAspGlnGluMetAlaGluLysValGlyAlaCysLeuGln 58428 : TCGGTGCTCCTGCGGGGCTTCGACCAGGAGATGGCCGAGAAGGTGGGCGCCTGCCTGCAG : 58487 308 : GlnLeuGlyValArgPheLeuArgLysPheValProValGlu >>>> Target Intr : 322 |||||||||||||||||||||||||||||||||||||||||| 688 bp GlnLeuGlyValArgPheLeuArgLysPheValProValGlu++ 58488 : CAGCTCGGCGTGCGCTTCCTGCGCAAGTTCGTGCCCGTGGAGgt................ : 58534 323 : on 8 >>>> ValGlnGlnLeuGluArgGlyLeuProGlyArgLeuLysValValAlaL : 338 |||||||||||||||!:!||||||||||||||||||||||||||||||| ++ValGlnGlnLeuGluLysGlyLeuProGlyArgLeuLysValValAlaL 58535 : .........agGTCCAGCAGCTGGAGAAGGGCCTGCCCGGGAGGCTGAAGGTCGTGGCTA : 59268 339 : ysSerThrGluGlyThrGluThrIleGluGlyIleTyrAsnThr >>>> Target In : 353 |||||||||||||||||||||||!!:||||||:!!||||||||| 6481 ysSerThrGluGlyThrGluThrMetGluGlyValTyrAsnThr++ 59269 : AATCCACGGAAGGGACAGAGACAATGGAGGGCGTTTACAACACGgt.............. : 59315 354 : tron 9 >>>> ValLeuLeuAlaIleGlyArgAspSerCysThrLysLysLeuGlyLe : 368 bp ||||||||||||||||||||||||||||||||||||||||||||||| ++ValLeuLeuAlaIleGlyArgAspSerCysThrLysLysLeuGlyLe 59316 : ...........agGTTTTGTTAGCAATTGGTCGTGACTCCTGCACGAAGAAGTTAGGGCT : 65839 369 : uGluLysIleGlyValAsnValSerGlu{Ly} >>>> Target Intron 10 >>>> : 378 |||||||||||||||||||:!!||||||{||} 735 bp uGluLysIleGlyValAsnIleSerGlu{Ly}++ 65840 : GGAGAAGATTGGTGTGAATATCAGTGAG{AA}gt.......................... : 65873 379 : {s}ThrGlyLysIleProValAsnAspGluGluGlnThrSerValSerTyrValTyrA : 397 {|}|||||||||||||||||||||! !|||||||||||||||||| !!|||||||||| ++{s}ThrGlyLysIleProValAsnGlyGluGluGlnThrSerValProTyrValTyrA 65874 : ag{G}ACGGGCAAGATCCCAGTAAATGGCGAGGAGCAGACCAGTGTGCCCTATGTCTACG : 66661 398 : laValGlyAspValLeuGluGlyLysProGlnLeuThrProValAlaValGlnAlaGlyL : 417 ||||||||||||||||||||||||||||||||||||||||||||||||||!:!||||||| laValGlyAspValLeuGluGlyLysProGlnLeuThrProValAlaValArgAlaGlyL 66662 : CTGTCGGGGACGTCCTGGAGGGCAAGCCGCAGCTCACCCCGGTCGCCGTGCGGGCGGGCA : 66721 418 : ysLeuLeuAlaArgArgLeuPheGlyGlyArgSerGluLys >>>> Target Intro : 431 ||||||||||||||||||||||||||||||||||||||||| 612 bp ysLeuLeuAlaArgArgLeuPheGlyGlyArgSerGluLys++ 66722 : AGCTGCTGGCGCGAAGGCTTTTTGGGGGCCGATCAGAGAAGgt................. : 66765 432 : n 11 >>>> CysAspTyrValAsnValProThrValValPheThrProLeuGluTyrG : 447 ||||||||||||||||||||||||||||||||||||||||||||||||| ++CysAspTyrValAsnValProThrValValPheThrProLeuGluTyrG 66766 : .........agTGTGACTACGTCAACGTCCCCACCGTGGTGTTCACGCCCTTGGAGTACG : 67423 448 : lyCysCysGlyTyrSerGluGluLysAlaGlyGluValTyrGlnAlaGluAsnLeuAsn : 467 ||||||||||||||||||||||||||||||||||||||! !|||||||||||||||..! lyCysCysGlyTyrSerGluGluLysAlaGlyGluValCysGlnAlaGluAsnLeuGly+ 67424 : GCTGCTGTGGGTACTCAGAGGAGAAGGCTGGCGAGGTGTGCCAGGCGGAGAATCTGGGTg : 67483 468 : >>>> Target Intron 12 >>>> ValTyrHisThrLeuPheTrpProLeuGluT : 477 4627 bp ||||||||||||||||||||||||||||||| + ++ValTyrHisThrLeuPheTrpProLeuGluT 67484 : t..........................agGTCTACCACACCCTGTTCTGGCCTCTCGAGT : 72140 478 : rpThrValAlaGlyArgAspAsnAsnThrCysTyrAlaLysIleIleCysAsnLysLeuA : 497 ||||||||||| !!|||||||||||||||||||||||||||||||||||||||||||||| rpThrValAlaCysArgAspAsnAsnThrCysTyrAlaLysIleIleCysAsnLysLeuA 72141 : GGACAGTGGCCTGCAGAGACAACAACACTTGCTACGCGAAGATAATCTGCAATAAACTGG : 72200 498 : spAsn >>>> Target Intron 13 >>>> AspArgValIleGlyPheHisValL : 507 ||||| 3645 bp ||||||||||||||||||||||||| spAsn++ ++AspArgValIleGlyPheHisValL 72201 : ACAACgt..........................agGATCGGGTGATAGGATTTCACGTCC : 75875 508 : euGlyProAsnAlaGlyGluIleThrGlnGlyPheAlaAlaAlaMetLysCysGlyLeuT : 527 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| euGlyProAsnAlaGlyGluIleThrGlnGlyPheAlaAlaAlaMetLysCysGlyLeuT 75876 : TCGGACCGAACGCCGGGGAGATCACTCAGGGGTTTGCCGCTGCCATGAAGTGTGGGCTCA : 75935 528 : hrLysGlnLeuLeuAspAspThrIleGlyIleHisProThrCysGlyGlu >>>> Tar : 544 |||||||||||||||||! !|||||||||||||||||||||||||||||| hrLysGlnLeuLeuAspAlaThrIleGlyIleHisProThrCysGlyGlu++ 75936 : CAAAGCAGCTGCTGGATGCCACCATCGGGATCCACCCCACGTGTGGAGAGgt........ : 75988 545 : get Intron 14 >>>> ValPheThrThrLeuGluIleThrLysAlaSerGlyLeuA : 557 139 bp |||||||||||||||||||||||||||||||||||||||| ++ValPheThrThrLeuGluIleThrLysAlaSerGlyLeuA 75989 : ..................agGTGTTCACCACCTTGGAGATCACCAAGGCGTCGGGACTGG : 76164 558 : spIleThrGlnLysGlyCysUnkGly : 565 |||||||||||||||||||| ||| spIleThrGlnLysGlyCys***Gly 76165 : ACATCACGCAGAAGGGCTGCTGAGGC : 76190 vulgar: SPP00000281_2.0 0 565 . NIVO01001699.1:subseq(4490624,126190) 49999 76190 + 2721 M 23 69 S 0 1 5 0 2 I 0 894 3 0 2 S 1 2 M 36 108 5 0 2 I 0 2649 3 0 2 M 35 105 5 0 2 I 0 209 3 0 2 M 24 72 S 0 1 5 0 2 I 0 890 3 0 2 S 1 2 M 39 117 S 0 1 5 0 2 I 0 2140 3 0 2 S 1 2 M 47 141 5 0 2 I 0 164 3 0 2 M 38 114 S 0 2 5 0 2 I 0 595 3 0 2 S 1 1 M 75 225 5 0 2 I 0 684 3 0 2 M 31 93 5 0 2 I 0 6477 3 0 2 M 25 75 S 0 2 5 0 2 I 0 731 3 0 2 S 1 1 M 52 156 5 0 2 I 0 608 3 0 2 M 36 108 5 0 2 I 0 4623 3 0 2 M 32 96 5 0 2 I 0 3641 3 0 2 M 45 135 5 0 2 I 0 135 3 0 2 M 22 66 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2017-11-24 ##type DNA # # # seqname source feature start end score strand frame attributes # NIVO01001699.1:subseq(4490624,126190) exonerate:protein2genome:local gene 50000 76190 2721 + . gene_id 1 ; sequence SPP00000281_2.0 ; gene_orientation + NIVO01001699.1:subseq(4490624,126190) exonerate:protein2genome:local cds 50000 50069 . + . NIVO01001699.1:subseq(4490624,126190) exonerate:protein2genome:local exon 50000 50069 . + . insertions 0 ; deletions 0 NIVO01001699.1:subseq(4490624,126190) exonerate:protein2genome:local splice5 50070 50071 . + . intron_id 1 ; splice_site "GT" NIVO01001699.1:subseq(4490624,126190) exonerate:protein2genome:local intron 50070 50967 . + . intron_id 1 NIVO01001699.1:subseq(4490624,126190) exonerate:protein2genome:local splice3 50966 50967 . + . intron_id 0 ; splice_site "AG" NIVO01001699.1:subseq(4490624,126190) exonerate:protein2genome:local cds 50968 51077 . + . NIVO01001699.1:subseq(4490624,126190) exonerate:protein2genome:local exon 50968 51077 . + . insertions 0 ; deletions 0 NIVO01001699.1:subseq(4490624,126190) exonerate:protein2genome:local splice5 51078 51079 . + . intron_id 2 ; splice_site "GT" NIVO01001699.1:subseq(4490624,126190) exonerate:protein2genome:local intron 51078 53730 . + . intron_id 2 NIVO01001699.1:subseq(4490624,126190) exonerate:protein2genome:local splice3 53729 53730 . + . intron_id 1 ; splice_site "AG" NIVO01001699.1:subseq(4490624,126190) exonerate:protein2genome:local cds 53731 53835 . + . NIVO01001699.1:subseq(4490624,126190) exonerate:protein2genome:local exon 53731 53835 . + . insertions 0 ; deletions 0 NIVO01001699.1:subseq(4490624,126190) exonerate:protein2genome:local splice5 53836 53837 . + . intron_id 3 ; splice_site "GT" NIVO01001699.1:subseq(4490624,126190) exonerate:protein2genome:local intron 53836 54048 . + . intron_id 3 NIVO01001699.1:subseq(4490624,126190) exonerate:protein2genome:local splice3 54047 54048 . + . intron_id 2 ; splice_site "AG" NIVO01001699.1:subseq(4490624,126190) exonerate:protein2genome:local cds 54049 54121 . + . NIVO01001699.1:subseq(4490624,126190) exonerate:protein2genome:local exon 54049 54121 . + . insertions 0 ; deletions 0 NIVO01001699.1:subseq(4490624,126190) exonerate:protein2genome:local splice5 54122 54123 . + . intron_id 4 ; splice_site "GT" NIVO01001699.1:subseq(4490624,126190) exonerate:protein2genome:local intron 54122 55015 . + . intron_id 4 NIVO01001699.1:subseq(4490624,126190) exonerate:protein2genome:local splice3 55014 55015 . + . intron_id 3 ; splice_site "AG" NIVO01001699.1:subseq(4490624,126190) exonerate:protein2genome:local cds 55016 55135 . + . NIVO01001699.1:subseq(4490624,126190) exonerate:protein2genome:local exon 55016 55135 . + . insertions 0 ; deletions 0 NIVO01001699.1:subseq(4490624,126190) exonerate:protein2genome:local splice5 55136 55137 . + . intron_id 5 ; splice_site "GT" NIVO01001699.1:subseq(4490624,126190) exonerate:protein2genome:local intron 55136 57279 . + . intron_id 5 NIVO01001699.1:subseq(4490624,126190) exonerate:protein2genome:local splice3 57278 57279 . + . intron_id 4 ; splice_site "AG" NIVO01001699.1:subseq(4490624,126190) exonerate:protein2genome:local cds 57280 57422 . + . NIVO01001699.1:subseq(4490624,126190) exonerate:protein2genome:local exon 57280 57422 . + . insertions 0 ; deletions 0 NIVO01001699.1:subseq(4490624,126190) exonerate:protein2genome:local splice5 57423 57424 . + . intron_id 6 ; splice_site "GT" NIVO01001699.1:subseq(4490624,126190) exonerate:protein2genome:local intron 57423 57590 . + . intron_id 6 NIVO01001699.1:subseq(4490624,126190) exonerate:protein2genome:local splice3 57589 57590 . + . intron_id 5 ; splice_site "AG" NIVO01001699.1:subseq(4490624,126190) exonerate:protein2genome:local cds 57591 57706 . + . NIVO01001699.1:subseq(4490624,126190) exonerate:protein2genome:local exon 57591 57706 . + . insertions 0 ; deletions 0 NIVO01001699.1:subseq(4490624,126190) exonerate:protein2genome:local splice5 57707 57708 . + . intron_id 7 ; splice_site "GT" NIVO01001699.1:subseq(4490624,126190) exonerate:protein2genome:local intron 57707 58305 . + . intron_id 7 NIVO01001699.1:subseq(4490624,126190) exonerate:protein2genome:local splice3 58304 58305 . + . intron_id 6 ; splice_site "AG" NIVO01001699.1:subseq(4490624,126190) exonerate:protein2genome:local cds 58306 58531 . + . NIVO01001699.1:subseq(4490624,126190) exonerate:protein2genome:local exon 58306 58531 . + . insertions 0 ; deletions 0 NIVO01001699.1:subseq(4490624,126190) exonerate:protein2genome:local splice5 58532 58533 . + . intron_id 8 ; splice_site "GT" NIVO01001699.1:subseq(4490624,126190) exonerate:protein2genome:local intron 58532 59219 . + . intron_id 8 NIVO01001699.1:subseq(4490624,126190) exonerate:protein2genome:local splice3 59218 59219 . + . intron_id 7 ; splice_site "AG" NIVO01001699.1:subseq(4490624,126190) exonerate:protein2genome:local cds 59220 59312 . + . NIVO01001699.1:subseq(4490624,126190) exonerate:protein2genome:local exon 59220 59312 . + . insertions 0 ; deletions 0 NIVO01001699.1:subseq(4490624,126190) exonerate:protein2genome:local splice5 59313 59314 . + . intron_id 9 ; splice_site "GT" NIVO01001699.1:subseq(4490624,126190) exonerate:protein2genome:local intron 59313 65793 . + . intron_id 9 NIVO01001699.1:subseq(4490624,126190) exonerate:protein2genome:local splice3 65792 65793 . + . intron_id 8 ; splice_site "AG" NIVO01001699.1:subseq(4490624,126190) exonerate:protein2genome:local cds 65794 65870 . + . NIVO01001699.1:subseq(4490624,126190) exonerate:protein2genome:local exon 65794 65870 . + . insertions 0 ; deletions 0 NIVO01001699.1:subseq(4490624,126190) exonerate:protein2genome:local splice5 65871 65872 . + . intron_id 10 ; splice_site "GT" NIVO01001699.1:subseq(4490624,126190) exonerate:protein2genome:local intron 65871 66605 . + . intron_id 10 NIVO01001699.1:subseq(4490624,126190) exonerate:protein2genome:local splice3 66604 66605 . + . intron_id 9 ; splice_site "AG" NIVO01001699.1:subseq(4490624,126190) exonerate:protein2genome:local cds 66606 66762 . + . NIVO01001699.1:subseq(4490624,126190) exonerate:protein2genome:local exon 66606 66762 . + . insertions 0 ; deletions 0 NIVO01001699.1:subseq(4490624,126190) exonerate:protein2genome:local splice5 66763 66764 . + . intron_id 11 ; splice_site "GT" NIVO01001699.1:subseq(4490624,126190) exonerate:protein2genome:local intron 66763 67374 . + . intron_id 11 NIVO01001699.1:subseq(4490624,126190) exonerate:protein2genome:local splice3 67373 67374 . + . intron_id 10 ; splice_site "AG" NIVO01001699.1:subseq(4490624,126190) exonerate:protein2genome:local cds 67375 67482 . + . NIVO01001699.1:subseq(4490624,126190) exonerate:protein2genome:local exon 67375 67482 . + . insertions 0 ; deletions 0 NIVO01001699.1:subseq(4490624,126190) exonerate:protein2genome:local splice5 67483 67484 . + . intron_id 12 ; splice_site "GT" NIVO01001699.1:subseq(4490624,126190) exonerate:protein2genome:local intron 67483 72109 . + . intron_id 12 NIVO01001699.1:subseq(4490624,126190) exonerate:protein2genome:local splice3 72108 72109 . + . intron_id 11 ; splice_site "AG" NIVO01001699.1:subseq(4490624,126190) exonerate:protein2genome:local cds 72110 72205 . + . NIVO01001699.1:subseq(4490624,126190) exonerate:protein2genome:local exon 72110 72205 . + . insertions 0 ; deletions 0 NIVO01001699.1:subseq(4490624,126190) exonerate:protein2genome:local splice5 72206 72207 . + . intron_id 13 ; splice_site "GT" NIVO01001699.1:subseq(4490624,126190) exonerate:protein2genome:local intron 72206 75850 . + . intron_id 13 NIVO01001699.1:subseq(4490624,126190) exonerate:protein2genome:local splice3 75849 75850 . + . intron_id 12 ; splice_site "AG" NIVO01001699.1:subseq(4490624,126190) exonerate:protein2genome:local cds 75851 75985 . + . NIVO01001699.1:subseq(4490624,126190) exonerate:protein2genome:local exon 75851 75985 . + . insertions 0 ; deletions 0 NIVO01001699.1:subseq(4490624,126190) exonerate:protein2genome:local splice5 75986 75987 . + . intron_id 14 ; splice_site "GT" NIVO01001699.1:subseq(4490624,126190) exonerate:protein2genome:local intron 75986 76124 . + . intron_id 14 NIVO01001699.1:subseq(4490624,126190) exonerate:protein2genome:local splice3 76123 76124 . + . intron_id 13 ; splice_site "AG" NIVO01001699.1:subseq(4490624,126190) exonerate:protein2genome:local cds 76125 76190 . + . NIVO01001699.1:subseq(4490624,126190) exonerate:protein2genome:local exon 76125 76190 . + . insertions 0 ; deletions 0 NIVO01001699.1:subseq(4490624,126190) exonerate:protein2genome:local similarity 50000 76190 2721 + . alignment_id 1 ; Query SPP00000281_2.0 ; Align 50000 1 69 ; Align 50970 25 108 ; Align 53731 61 105 ; Align 54049 96 72 ; Align 55018 121 117 ; Align 57282 161 141 ; Align 57591 208 114 ; Align 58307 247 225 ; Align 59220 322 93 ; Align 65794 353 75 ; Align 66607 379 156 ; Align 67375 431 108 ; Align 72110 467 96 ; Align 75851 499 135 ; Align 76125 544 66 # --- END OF GFF DUMP --- # -- completed exonerate analysis