genewise output Score 826.98 bits over entire alignment Scores as bits over a synchronous coding model Warning: The bits scores is not probablistically correct for single seqs See WWW help for more info SPP00000280_2.0 1 AGRQCYDLLVIGGGSGGLACAKE AGRQ YDLLVIGGGSGGLACAKE AGRQRYDLLVIGGGSGGLACAKE A:A[gct] NIVO01019577.1:50000 ggccctgccgagggtggcgtgagGGTGCGTG Intron 1 TAGCT cggagaattttgggcggtcgcaa <1-----[50070:53320]-1> acgagtccggcctacccgcccga SPP00000280_2.0 25 AQLGKKVAVLDYVEPSPQ TRWGL AQLGKKVAVLDYVEPSP+ TRWGL AQLGKKVAVLDYVEPSPR G:G[ggc] TRWGL NIVO01019577.1:53323 gccgaagggcgtggctccGGTAGGCC Intron 2 CAGGCaatgc catgaatcttaatacccg <1-----[53378:53495]-1> cgggt cggggggcggccggtcca cggcc SPP00000280_2.0 49 GGTCVNVGCIPKKLMHQAALLGGMIRDAPHYGWGVAQAPHS GGTCVNVGCIPKKLMHQAALLGGMIRDAPHYGW VAQAPH GGTCVNVGCIPKKLMHQAALLGGMIRDAPHYGWRVAQAPHD NIVO01019577.1:53513 ggatgaggtacaacaccggccggaacggcctgtcggcgccg ggcgtatggtcaattaaccttggttgaccaagggtcaccaa ccccgtcccccggggcggggggcgccccccccgcgcgcacc SPP00000280_2.0 90 ATLADAVQNHVKSLNWGHRIQLQ AT+ADAVQNHVKSLNWGHR+QLQ W:W[tgg] ATMADAVQNHVKSLNWGHRVQLQ NIVO01019577.1:53636 TGGTGAGGG Intron 3 CAGGgaaggggcacgatcatgccgccc <2-----[53638:53985]-2> cctcactaaatactaggagtata aaggtccgccggcgcgccccggg SPP00000280_2.0 114 D KVKYFNVKASFVDTHTVCGVSK D KVKY+NVKASFVDTHTVCGVSK D R:R[agg] KVKYLNVKASFVDTHTVCGVSK NIVO01019577.1:54056 gAGGTACCAC Intron 4 CAGGagattagagatggacagtggta a <2-----[54061:54677]-2> ataatatacgttacactggtca c acgtgccgcctccgcgtctcca SPP00000280_2.0 138 GGEE TLLSAEHIVIATGGRPRYPTH GGEE TLLSAEHIVIATGGRPRYPTH GGEE TLLSAEHIVIATGGRPRYPTH NIVO01019577.1:54745 ggggGTGAGCA Intron 5 CAGacctggcagagaggccctcac ggaa<0-----[54757:55170]-0>cttccaatttccgggcgacca tggg tgtgcgctctccatgggccgc SPP00000280_2.0 163 IEGALEYGITSDDLFWLKESPGK IEGALEYGITSDDLFWLKESPGK IEGALEYGITSDDLFWLKESPGK NIVO01019577.1:55234 GTGAGTG Intron 6 CAGagggtgtgaaaggcttcagtcga <0-----[55234:56098]-0>tagctaagtcgaattgtaaccga catcgacgcgctcccgggactga SPP00000280_2.0 186 LVVGAS LVVGAS T:T[acg] LVVGAS NIVO01019577.1:56168 ACGTAAGGC Intron 7 CAGGtgggga <2-----[56170:62294]-2> tttgcg ggcgcc SPP00000280_2.0 193 VALECAGLLTGLGLDTTVMIRSV VALECAG LTGLGLDTTVMIRSV Y:Y[tac] VALECAGFLTGLGLDTTVMIRSV NIVO01019577.1:62314 TGTATCCT Intron 8 CAGACggcgtggtcagcgtgaagaacag <1-----[62315:62917]-1> tctagcgttcgtgtacctttggt acggcgccccgccgccccgaccg SPP00000280_2.0 217 PLRAFDQ QMASLVTEHMAGHGTRILR PLRAFDQ QMA LVTEHMAGHGTR+LR PLRAFDQ QMALLVTEHMAGHGTRVLR NIVO01019577.1:62989 cccgtgcGTAACGC Intron 9 CAGcagtcgagcaggcgacgcc ctgctaa<0-----[63010:64115]-0>atctttcaatcgagcgttg ccgcccg agtgtccgcgtccccgcgg SPP00000280_2.0 243 GCAPEKVEKLPGQQLRVTWVDLTSDRKDAGTFDTVLWAI GCAPE+VEKLPGQQLRVTWVDL SDRKDAGTFDTVLWAI GCAPERVEKLPGQQLRVTWVDLASDRKDAGTFDTVLWAI NIVO01019577.1:64173 gtgcgaggaccgccccgatggcgtgcagggatgagctga ggccagtaatcgaatgtcgtatccagaacgctacttgct ccccgggggcacggccccggctcgcggtgcctccgcgca SPP00000280_2.0 282 RVPETASLNLEKAGVHTNPVTGK RVPETASLNLEKAGV TNPVTGK G:G[ggc] RVPETASLNLEKAGVRTNPVTGK NIVO01019577.1:64290 GGTAAGGG Intron 10 CAGGCcgcgagacatgagggcaacgaga <1-----[64291:70253]-1> gtcaccgtataacgtgcactcga ataacgtgtgagttgtgccctgg SPP00000280_2.0 306 ILVDAQETTSVPHIYAIGDVAE GRPE I VDAQE TS+PHIYAIGDVAE GRPE IFVDAQEATSIPHIYAIGDVAE GRPE NIVO01019577.1:70325 atgggcggataccatgagggggGTACGGC Intron 11 CAGgccg tttacaaccctcatactgatca<0-----[70391:71415]-0>ggca ccttcgaccccccccccccgag gggg SPP00000280_2.0 332 LTPTAIMAGRLLAQRLSGRTSDLMDYSS LTPTAIMAGRLLAQRLSGRTSDLMDYSS LTPTAIMAGRLLAQRLSGRTSDLMDYSS NIVO01019577.1:71428 cacagaaggcccgcccagcatgcagtaaGTGAGTG Intron 12 tccccttcggttcagtgggccattaagg<0-----[71512:71890] gacaccgcggcgcgggccgcacggcccc SPP00000280_2.0 360 VPTTVFTPLEYGCVGLSEEAAVARHGEEHVEVSPGPGVGCSMQAPV VPTTVFTPLEYGCVGLSEEAAVARHGEEHVEVSPGPG G S+QA V VPTTVFTPLEYGCVGLSEEAAVARHGEEHVEVSPGPG!G-SVQARV NIVO01019577.1:71888 CAGgcaagtaccgtgtggctggggggccgggcgggacgcg1g agcgcg -0>tcccttcctaaggtgtcaacctcgagaaatatgcgcg g gtacgt ccgtcctcggtccgggaggacgtctaagcgggtaccg c cggctg SPP00000280_2.0 406 APTP LVLGLHFLGPNAGEVIQGFALG APT LVLGLHFLGPNAGEV QGFALG APTL LVLGLHFLGPNAGEVTQGFALG NIVO01019577.1:72024 gcacGTGACAG Intron 13 CAGcgcgcctcgcaggggacgtgcg ccct<0-----[72036:73364]-0>tttgtattgcacgatcagtctg cccg gggcgccccccacattggtcgg SPP00000280_2.0 432 I CGASYQQLMRTVGIHPTCAEEV I CGAS+QQ++RTVGIHPTCAEEV I K:K[aag] CGASFQQVIRTVGIHPTCAEEV NIVO01019577.1:73431 aAAGTGAGTC Intron 14 CAGGtggttccgacaggaccatgggg t <2-----[73436:74076]-2> ggcctaattgctgtaccgcaat c tgcccgggacggccccctgggg SPP00000280_2.0 456 AKLRISKRSGLDPTVTGC AKLRISKRSGLDPTVTGC AKLRISKRSGLDPTVTGC NIVO01019577.1:74144 gaccatactgcgcagagt catgtcagcgtacctcgg cgccccgcccgccggccc // Making a A in phase 1 intron Making a G in phase 1 intron Making a W in phase 2 intron Making a R in phase 2 intron Making a T in phase 2 intron Making a Y in phase 1 intron Making a G in phase 1 intron Making a K in phase 2 intron >NIVO01019577.1:subseq(186204,123436).pep AGRQRYDLLVIGGGSGGLACAKEAAQLGKKVAVLDYVEPSPRGTRWGLGGTCVNVGCIPK KLMHQAALLGGMIRDAPHYGWRVAQAPHDWATMADAVQNHVKSLNWGHRVQLQDRKVKYL NVKASFVDTHTVCGVSKGGEETLLSAEHIVIATGGRPRYPTHIEGALEYGITSDDLFWLK ESPGKTLVVGASYVALECAGFLTGLGLDTTVMIRSVPLRAFDQQMALLVTEHMAGHGTRV LRGCAPERVEKLPGQQLRVTWVDLASDRKDAGTFDTVLWAIGRVPETASLNLEKAGVRTN PVTGKIFVDAQEATSIPHIYAIGDVAEGRPELTPTAIMAGRLLAQRLSGRTSDLMDYSSV PTTVFTPLEYGCVGLSEEAAVARHGEEHVEVSPGPGXGSVQARVAPTLLVLGLHFLGPNA GEVTQGFALGIKCGASFQQVIRTVGIHPTCAEEVAKLRISKRSGLDPTVTGC // >NIVO01019577.1:subseq(186204,123436).[50000:72001].sp GCAGGCCGGCAACGGTATGACCTCCTGGTGATCGGCGGTGGATCCGGCGGCCTGGCCTGC GCCAAGGAAGCTGCCCAGCTGGGGAAGAAGGTGGCCGTGCTGGACTACGTGGAGCCTTCC CCCCGAGGCACCAGGTGGGGCCTCGGCGGCACCTGCGTGAATGTCGGCTGCATCCCCAAG AAGCTGATGCACCAGGCGGCGCTGCTGGGGGGCATGATCCGCGACGCCCCCCACTACGGC TGGCGCGTGGCCCAGGCCCCACACGACTGGGCAACAATGGCGGATGCCGTCCAGAACCAC GTGAAGTCCCTGAACTGGGGCCACCGCGTCCAGCTGCAGGACAGGAAAGTCAAGTATTTG AACGTCAAGGCCAGCTTTGTCGACACGCACACGGTTTGCGGTGTCTCCAAAGGTGGGGAG GAGACTCTGCTTTCGGCCGAGCACATTGTCATTGCCACCGGAGGTCGGCCGCGGTACCCC ACGCACATCGAAGGTGCCTTGGAATACGGGATCACGAGCGATGACCTCTTCTGGCTGAAG GAATCCCCTGGGAAAACGTTGGTGGTCGGGGCCAGCTACGTAGCCCTGGAGTGCGCGGGC TTCCTCACCGGGCTCGGCTTGGACACCACCGTCATGATACGCAGCGTGCCCCTCCGGGCC TTCGACCAGCAAATGGCTTTGCTTGTCACCGAGCACATGGCTGGCCACGGCACCCGGGTC CTGCGGGGCTGCGCCCCCGAGAGGGTGGAGAAGCTCCCAGGCCAGCAGCTCCGCGTCACC TGGGTGGACCTTGCCTCGGACCGGAAGGATGCGGGCACCTTTGACACCGTGCTCTGGGCC ATAGGCCGAGTTCCAGAAACCGCGAGTCTGAATTTGGAAAAGGCTGGTGTGCGTACGAAC CCCGTCACTGGGAAGATCTTCGTTGATGCCCAGGAAGCCACCTCCATCCCCCACATCTAC GCCATCGGCGACGTGGCAGAGGGGCGGCCGGAGCTGACACCCACAGCCATCATGGCCGGG CGGCTCCTGGCCCAGCGGCTGAGCGGCCGGACCTCAGACCTGATGGACTACAGCAGCGTC CCCACGACTGTCTTCACTCCCCTGGAGTATGGCTGCGTGGGGCTGTCAGAGGAGGCAGCC GTGGCTCGCCATGGAGAAGAGCACGTGGAGGTGAGTCCAGGCCCCGGG >NIVO01019577.1:subseq(186204,123436).[72003:74197].sp GGCAGCGTGCAGGCCCGTGTGGCCCCCACCCTGCTGGTGCTGGGCCTGCACTTCCTCGGC CCCAACGCAGGCGAAGTTACTCAGGGGTTTGCCCTGGGGATCAAGTGTGGGGCCTCCTTC CAGCAGGTGATACGCACGGTGGGCATCCACCCCACCTGTGCGGAGGAGGTGGCCAAGCTC CGCATCTCCAAGCGCTCCGGCCTGGACCCCACGGTGACCGGCTGC // NIVO01019577.1:subseq(186204,123436) GeneWise match 50000 72001 707.75 + . NIVO01019577.1:subseq(186204,123436)-genewise-prediction-1 NIVO01019577.1:subseq(186204,123436) GeneWise cds 50000 50069 0.00 + 0 NIVO01019577.1:subseq(186204,123436)-genewise-prediction-1 NIVO01019577.1:subseq(186204,123436) GeneWise intron 50070 53320 0.00 + . NIVO01019577.1:subseq(186204,123436)-genewise-prediction-1 NIVO01019577.1:subseq(186204,123436) GeneWise cds 53321 53377 0.00 + 2 NIVO01019577.1:subseq(186204,123436)-genewise-prediction-1 NIVO01019577.1:subseq(186204,123436) GeneWise intron 53378 53495 0.00 + . NIVO01019577.1:subseq(186204,123436)-genewise-prediction-1 NIVO01019577.1:subseq(186204,123436) GeneWise cds 53496 53637 0.00 + 2 NIVO01019577.1:subseq(186204,123436)-genewise-prediction-1 NIVO01019577.1:subseq(186204,123436) GeneWise intron 53638 53985 0.00 + . NIVO01019577.1:subseq(186204,123436)-genewise-prediction-1 NIVO01019577.1:subseq(186204,123436) GeneWise cds 53986 54060 0.00 + 1 NIVO01019577.1:subseq(186204,123436)-genewise-prediction-1 NIVO01019577.1:subseq(186204,123436) GeneWise intron 54061 54677 0.00 + . NIVO01019577.1:subseq(186204,123436)-genewise-prediction-1 NIVO01019577.1:subseq(186204,123436) GeneWise cds 54678 54756 0.00 + 1 NIVO01019577.1:subseq(186204,123436)-genewise-prediction-1 NIVO01019577.1:subseq(186204,123436) GeneWise intron 54757 55170 0.00 + . NIVO01019577.1:subseq(186204,123436)-genewise-prediction-1 NIVO01019577.1:subseq(186204,123436) GeneWise cds 55171 55233 0.00 + 0 NIVO01019577.1:subseq(186204,123436)-genewise-prediction-1 NIVO01019577.1:subseq(186204,123436) GeneWise intron 55234 56098 0.00 + . NIVO01019577.1:subseq(186204,123436)-genewise-prediction-1 NIVO01019577.1:subseq(186204,123436) GeneWise cds 56099 56169 0.00 + 0 NIVO01019577.1:subseq(186204,123436)-genewise-prediction-1 NIVO01019577.1:subseq(186204,123436) GeneWise intron 56170 62294 0.00 + . NIVO01019577.1:subseq(186204,123436)-genewise-prediction-1 NIVO01019577.1:subseq(186204,123436) GeneWise cds 62295 62314 0.00 + 1 NIVO01019577.1:subseq(186204,123436)-genewise-prediction-1 NIVO01019577.1:subseq(186204,123436) GeneWise intron 62315 62917 0.00 + . NIVO01019577.1:subseq(186204,123436)-genewise-prediction-1 NIVO01019577.1:subseq(186204,123436) GeneWise cds 62918 63009 0.00 + 2 NIVO01019577.1:subseq(186204,123436)-genewise-prediction-1 NIVO01019577.1:subseq(186204,123436) GeneWise intron 63010 64115 0.00 + . NIVO01019577.1:subseq(186204,123436)-genewise-prediction-1 NIVO01019577.1:subseq(186204,123436) GeneWise cds 64116 64290 0.00 + 0 NIVO01019577.1:subseq(186204,123436)-genewise-prediction-1 NIVO01019577.1:subseq(186204,123436) GeneWise intron 64291 70253 0.00 + . NIVO01019577.1:subseq(186204,123436)-genewise-prediction-1 NIVO01019577.1:subseq(186204,123436) GeneWise cds 70254 70390 0.00 + 2 NIVO01019577.1:subseq(186204,123436)-genewise-prediction-1 NIVO01019577.1:subseq(186204,123436) GeneWise intron 70391 71415 0.00 + . NIVO01019577.1:subseq(186204,123436)-genewise-prediction-1 NIVO01019577.1:subseq(186204,123436) GeneWise cds 71416 71511 0.00 + 0 NIVO01019577.1:subseq(186204,123436)-genewise-prediction-1 NIVO01019577.1:subseq(186204,123436) GeneWise intron 71512 71890 0.00 + . NIVO01019577.1:subseq(186204,123436)-genewise-prediction-1 NIVO01019577.1:subseq(186204,123436) GeneWise cds 71891 72001 0.00 + 0 NIVO01019577.1:subseq(186204,123436)-genewise-prediction-1 NIVO01019577.1:subseq(186204,123436) GeneWise match 72003 74197 119.23 + . NIVO01019577.1:subseq(186204,123436)-genewise-prediction-2 NIVO01019577.1:subseq(186204,123436) GeneWise cds 72003 72035 0.00 + 0 NIVO01019577.1:subseq(186204,123436)-genewise-prediction-2 NIVO01019577.1:subseq(186204,123436) GeneWise intron 72036 73364 0.00 + . NIVO01019577.1:subseq(186204,123436)-genewise-prediction-2 NIVO01019577.1:subseq(186204,123436) GeneWise cds 73365 73435 0.00 + 0 NIVO01019577.1:subseq(186204,123436)-genewise-prediction-2 NIVO01019577.1:subseq(186204,123436) GeneWise intron 73436 74076 0.00 + . NIVO01019577.1:subseq(186204,123436)-genewise-prediction-2 NIVO01019577.1:subseq(186204,123436) GeneWise cds 74077 74197 0.00 + 1 NIVO01019577.1:subseq(186204,123436)-genewise-prediction-2 // genewise output Score 20.97 bits over entire alignment Scores as bits over a synchronous coding model Warning: The bits scores is not probablistically correct for single seqs See WWW help for more info SPP00000280_2.0 393 PGPGVGCSMQAPVAPTP P P +GC + PVA TP PRPPLGCRLLPPVAGTP NIVO01019577.-102326 cccccgtcccccgggac cgcctgggttcctcgcc ccatggtgcagcgcgca // >NIVO01019577.1:subseq(186204,123436).pep PRPPLGCRLLPPVAGTP // >NIVO01019577.1:subseq(186204,123436).[102326:102274].sp CCCCGCCCACCTCTGGGGTGTCGGCTCCTACCGCCCGTGGCCGGGACCCCA // NIVO01019577.1:subseq(186204,123436) GeneWise match 102326 102276 20.97 - . NIVO01019577.1:subseq(186204,123436)-genewise-prediction-1 NIVO01019577.1:subseq(186204,123436) GeneWise cds 102326 102276 0.00 - 0 NIVO01019577.1:subseq(186204,123436)-genewise-prediction-1 //